AT3G17205 (UPL6)

Aliases : UPL6

Description : ubiquitin protein ligase 6

Gene families : OG0001555 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001555_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G17205

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00255750	UPL7,...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
AMTR_s00003p00213880	UPL6,...	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
Aev_g04174	UPL6	E3 ubiquitin ligase *(UPL6) & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g11314	UPL7	E3 ubiquitin ligase *(UPL6) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g26448	UPL6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g62754	UPL6	E3 ubiquitin ligase *(UPL6) & original description: none	0.07	OrthoFinder output from all 47 species
Aob_g15928	UPL6	E3 ubiquitin ligase *(UPL6) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g20441	UPL7	E3 ubiquitin ligase *(UPL6) & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene15620.t1	UPL6, Aspi01Gene15620	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene18040.t1	UPL6, Aspi01Gene18040	E3 ubiquitin ligase *(UPL6) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62697.t1	UPL7, Aspi01Gene62697	E3 ubiquitin ligase *(UPL6) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G020700.1	UPL6, Ceric.05G020700	E3 ubiquitin ligase *(UPL6) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.1Z062300.1	UPL7, Ceric.1Z062300	E3 ubiquitin ligase *(UPL6) & original description:...	0.04	OrthoFinder output from all 47 species
Dcu_g02012	UPL7	E3 ubiquitin ligase *(UPL6) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g10609	UPL6	E3 ubiquitin ligase *(UPL6) & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g15093	UPL6	E3 ubiquitin ligase *(UPL6) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01033734001	UPL7	Protein degradation.peptide tagging.Ubiquitin...	0.08	OrthoFinder output from all 47 species
GSVIVT01034942001	UPL6	Protein degradation.peptide tagging.Ubiquitin...	0.14	OrthoFinder output from all 47 species
Gb_22218	UPL7	monomeric E3 ubiquitin ligase (HECT)	0.05	OrthoFinder output from all 47 species
LOC_Os03g47949.1	UPL7, LOC_Os03g47949	monomeric E3 ubiquitin ligase (HECT)	0.03	OrthoFinder output from all 47 species
LOC_Os05g06690.1	UPL6, LOC_Os05g06690	monomeric E3 ubiquitin ligase (HECT)	0.09	OrthoFinder output from all 47 species
Lfl_g08600	UPL6	E3 ubiquitin ligase *(UPL6) & original description: none	0.06	OrthoFinder output from all 47 species
MA_10436808g0010	UPL6	E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp3g18370.1	UPL6	monomeric E3 ubiquitin ligase (HECT)	0.03	OrthoFinder output from all 47 species
Mp7g02100.1	UPL7	monomeric E3 ubiquitin ligase (HECT)	0.04	OrthoFinder output from all 47 species
Pir_g00663	UPL6	E3 ubiquitin ligase *(UPL6) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g05330	UPL6	E3 ubiquitin ligase *(UPL6) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005368	UPL7	E3 ubiquitin ligase *(UPL6) & original description: CDS=254-3667	0.03	OrthoFinder output from all 47 species
Sam_g16308	No alias	E3 ubiquitin ligase *(UPL6) & original description: none	0.05	OrthoFinder output from all 47 species
Smo443962	UPL6	Protein degradation.peptide tagging.Ubiquitin...	0.1	OrthoFinder output from all 47 species
Solyc01g057900.3.1	UPL6, Solyc01g057900	monomeric E3 ubiquitin ligase (HECT)	0.05	OrthoFinder output from all 47 species
Tin_g13531	UPL6	E3 ubiquiTin ligase *(UPL6) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e031128_P003	UPL6, Zm00001e031128	monomeric E3 ubiquitin ligase (HECT)	0.03	OrthoFinder output from all 47 species
Zm00001e039899_P001	UPL6, Zm00001e039899	monomeric E3 ubiquitin ligase (HECT)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	IBA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	ISS	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010191	mucilage metabolic process	IEP	HCCA
BP	GO:0010192	mucilage biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0040034	regulation of development, heterochronic	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0045596	negative regulation of cell differentiation	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	HCCA
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048497	maintenance of floral organ identity	IEP	HCCA
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	HCCA
BP	GO:0048509	regulation of meristem development	IEP	HCCA
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090700	maintenance of plant organ identity	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000569	HECT_dom	724	1029

External Links

No external refs found!

AT3G17205 (UPL6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation