AT3G21230 (4CL5)

Aliases : 4CL5

Description : 4-coumarate:CoA ligase 5

Gene families : OG0000673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000673_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G21230
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AT3G21240	AT4CL2, 4CL2	4-coumarate:CoA ligase 2	0.04	OrthoFinder output from all 47 species
Adi_g115581	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Aob_g06612	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.12G038600.1	4CL3, Ceric.12G038600	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Dde_g31145	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g20793	AT4CL2, 4CL2	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01024400001	4CL3	4-coumarate--CoA ligase 2 OS=Glycine max	0.04	OrthoFinder output from all 47 species
GSVIVT01029183001	AT4CL2, 4CL2	4-coumarate--CoA ligase 1 OS=Nicotiana tabacum	0.03	OrthoFinder output from all 47 species
LOC_Os02g08100.1	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
LOC_Os06g44620.1	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
MA_109119g0010	4CL3	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.04	OrthoFinder output from all 47 species
MA_633407g0010	AT4CL2, 4CL2	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
Mp5g01200.1	4CL1, AT4CL1, 4CL.1	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023264	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Smo173133	4CL3	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.02	OrthoFinder output from all 47 species
Smo177393	AT4CL2, 4CL2	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
Spa_g22789	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Tin_g13836	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Tin_g43686	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.05	OrthoFinder output from all 47 species
Zm00001e013798_P002	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	ND	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009611	response to wounding	RCA	Interproscan
BP	GO:0009698	phenylpropanoid metabolic process	None	Extended
BP	GO:0009699	phenylpropanoid biosynthetic process	IDA	Interproscan
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009804	coumarin metabolic process	None	Extended
BP	GO:0009805	coumarin biosynthetic process	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
MF	GO:0016207	4-coumarate-CoA ligase activity	IDA	Interproscan
MF	GO:0016405	CoA-ligase activity	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	None	Extended
MF	GO:0016878	acid-thiol ligase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033037	polysaccharide localization	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044550	secondary metabolite biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0052542	defense response by callose deposition	RCA	Interproscan
BP	GO:0052545	callose localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0005201	extracellular matrix structural constituent	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009694	jasmonic acid metabolic process	IEP	HCCA
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
BP	GO:0042214	terpene metabolic process	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0046246	terpene biosynthetic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
CC	GO:0046658	obsolete anchored component of plasma membrane	IEP	HCCA
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
MF	GO:0097007	4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity	IEP	HCCA
MF	GO:0097008	(3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:0120252	hydrocarbon metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025110	AMP-bd_C	479	554
IPR000873	AMP-dep_Synth/Lig_com	62	470

External Links

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AT3G21230 (4CL5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation