AT3G21240 (AT4CL2, 4CL2)

Aliases : AT4CL2, 4CL2

Description : 4-coumarate:CoA ligase 2

Gene families : OG0000673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000673_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G21240

Target	Alias	Description	ECC score	Gene Family Method
AT1G62940	ACOS5	acyl-CoA synthetase 5	0.03	OrthoFinder output from all 47 species
AT3G21230	4CL5	4-coumarate:CoA ligase 5	0.04	OrthoFinder output from all 47 species
Adi_g103472	AT4CL2, 4CL2	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Adi_g115581	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.05	OrthoFinder output from all 47 species
Aev_g31792	AT4CL2, 4CL2	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Ala_g24085	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Als_g05666	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Als_g14525	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Als_g48534	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Aob_g03284	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene11403.t1	AT4CL2, 4CL2,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0114.g046013	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.05	OrthoFinder output from all 47 species
Cba_g03267	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Cba_g34238	AT4CL2, 4CL2	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Cba_g41839	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Ceric.12G038600.1	4CL3, Ceric.12G038600	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.17G083800.1	AT4CL2, 4CL2,...	EC_6.2 ligase forming carbon-sulfur bond & original...	0.07	OrthoFinder output from all 47 species
Dcu_g07017	AT4CL2, 4CL2	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Dcu_g09728	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Dde_g24331	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Dde_g31145	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g20793	AT4CL2, 4CL2	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01010497001	ACOS5	Cell wall.sporopollenin.synthesis.ACS5 acyl-CoA synthetase	0.06	OrthoFinder output from all 47 species
GSVIVT01029182001	4CL1, AT4CL1, 4CL.1	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.05	OrthoFinder output from all 47 species
GSVIVT01029183001	AT4CL2, 4CL2	4-coumarate--CoA ligase 1 OS=Nicotiana tabacum	0.05	OrthoFinder output from all 47 species
LOC_Os02g08100.1	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
LOC_Os04g24530.1	ACOS5, LOC_Os04g24530	acyl-CoA synthetase (ACS5)	0.03	OrthoFinder output from all 47 species
LOC_Os06g44620.1	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
LOC_Os08g14760.1	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.05	OrthoFinder output from all 47 species
LOC_Os08g34790.1	AT4CL2, 4CL2,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.04	OrthoFinder output from all 47 species
Len_g58453	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.02	OrthoFinder output from all 47 species
MA_109119g0010	4CL3	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.02	OrthoFinder output from all 47 species
Msp_g40313	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g32420	4CL1, AT4CL1, 4CL.1	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Pnu_g07993	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Pnu_g19655	4CL3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g08302	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006230	4CL3	not classified & original description: CDS=1-975	0.05	OrthoFinder output from all 47 species
Sam_g51306	No alias	acyl-CoA synthetase *(ACS5) & original description: none	0.03	OrthoFinder output from all 47 species
Smo173133	4CL3	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.04	OrthoFinder output from all 47 species
Smo177393	AT4CL2, 4CL2	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
Solyc02g088710.3.1	ACOS5, Solyc02g088710	acyl-CoA synthetase (ACS5)	0.04	OrthoFinder output from all 47 species
Solyc03g097030.3.1	4CL3, Solyc03g097030	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species
Solyc06g068650.4.1	AT4CL2, 4CL2,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.06	OrthoFinder output from all 47 species
Spa_g07084	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Spa_g09896	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Spa_g47039	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g07442	4CL3	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Tin_g11239	ACOS5	acyl-CoA synthetase *(ACS5) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013798_P002	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.04	OrthoFinder output from all 47 species
Zm00001e016374_P001	ACOS5, Zm00001e016374	acyl-CoA synthetase (ACS5)	0.03	OrthoFinder output from all 47 species
Zm00001e037698_P001	4CL1, AT4CL1,...	p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	IEP	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009611	response to wounding	IEP	Interproscan
BP	GO:0009611	response to wounding	RCA	Interproscan
BP	GO:0009620	response to fungus	IEP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009698	phenylpropanoid metabolic process	TAS	Interproscan
BP	GO:0009699	phenylpropanoid biosynthetic process	None	Extended
BP	GO:0009804	coumarin metabolic process	None	Extended
BP	GO:0009805	coumarin biosynthetic process	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016207	4-coumarate-CoA ligase activity	IDA	Interproscan
MF	GO:0016405	CoA-ligase activity	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	None	Extended
MF	GO:0016878	acid-thiol ligase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044550	secondary metabolite biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0046409	p-coumarate 3-hydroxylase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025110	AMP-bd_C	465	540
IPR000873	AMP-dep_Synth/Lig_com	45	456

External Links

No external refs found!

AT3G21240 (AT4CL2, 4CL2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation