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  5. AT3G22230

AT3G22230


Description : Ribosomal L27e protein family


Gene families : OG0000924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000924_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G22230

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00176990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
AMTR_s00045p00086530 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
AT2G32220 No alias Ribosomal L27e protein family 0.03 OrthoFinder output from all 47 species
Adi_g001800 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g039162 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g041824 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g042919 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Adi_g088547 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Adi_g094813 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g119864 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g128378 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g128386 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g18759 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.26 OrthoFinder output from all 47 species
Ala_g31238 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ala_g39103 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Als_g21878 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g21879 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Als_g25310 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g58974 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aob_g09867 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g21997 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Aob_g30984 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g41248 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g16882 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aop_g30907 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Aop_g33173 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.26 OrthoFinder output from all 47 species
Azfi_s0123.g048378 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Cba_g73590 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.11G027700.1 Ceric.11G027700 component *(eL27) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ceric.22G025300.1 Ceric.22G025300 component *(eL27) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021275.23 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 OrthoFinder output from all 47 species
Cre17.g701650 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.43 OrthoFinder output from all 47 species
Dac_g26159 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g29436 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g32145 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g40041 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g40042 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dde_g23040 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01012080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
GSVIVT01020410001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Gb_34700 No alias component RPL27 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Gb_36674 No alias component RPL27 of LSU proteome component 0.22 OrthoFinder output from all 47 species
LOC_Os02g18380.1 LOC_Os02g18380 component RPL27 of LSU proteome component 0.09 OrthoFinder output from all 47 species
LOC_Os10g41470.1 LOC_Os10g41470 component RPL27 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Len_g08706 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Len_g27313 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g00268 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g20098 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_3390g0010 No alias component RPL27 of LSU proteome component 0.21 OrthoFinder output from all 47 species
Mp4g23910.1 No alias component RPL27 of LSU proteome component 0.36 OrthoFinder output from all 47 species
Msp_g02195 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g18021 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Nbi_g20151 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Nbi_g40024 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g04282 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g07123 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ppi_g11574 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g14343 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g19581 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g20543 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g22762 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g22766 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ppi_g33968 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025908 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0521.g027461 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g00195 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g13937 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g20317 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g28095 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Sam_g30675 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g30677 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Sam_g31068 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g31973 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g32165 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g36664 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g46235 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g48247 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo166700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 OrthoFinder output from all 47 species
Solyc06g073300.1.1 Solyc06g073300 component RPL27 of LSU proteome component 0.3 OrthoFinder output from all 47 species
Solyc07g043360.1.1 Solyc07g043360 component RPL27 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Spa_g03073 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Spa_g24106 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g33923 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g44975 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Tin_g43604 No alias component *(eL27) of large ribosomal-subunit (LSU)... 0.24 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009955 adaxial/abaxial pattern specification IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048513 animal organ development IEP HCCA
BP GO:0048569 post-embryonic animal organ development IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001141 Ribosomal_L27e 52 135
No external refs found!