Description : Pectin lyase-like superfamily protein
Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G24130 | |
| Cluster | HCCA: Cluster_31 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ala_g20050 | No alias | pectin methylesterase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015022001 | No alias | Cell wall.pectin.homogalacturonan.modification and... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g44340.1 | ATPE11, PE11,... | pectin methylesterase | 0.02 | OrthoFinder output from all 47 species | |
| MA_16389g0020 | No alias | pectin methylesterase | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g62948 | No alias | pectin methylesterase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g11685 | No alias | pectin methylesterase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g47305 | No alias | pectin methylesterase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e035522_P001 | QRT1, Zm00001e035522 | pectin methylesterase | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005576 | extracellular region | ISM | Interproscan |
| CC | GO:0009505 | plant-type cell wall | ISS | Interproscan |
| MF | GO:0030599 | pectinesterase activity | ISS | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000003 | reproduction | IEP | HCCA |
| BP | GO:0000723 | telomere maintenance | IEP | HCCA |
| MF | GO:0004650 | polygalacturonase activity | IEP | HCCA |
| BP | GO:0007129 | homologous chromosome pairing at meiosis | IEP | HCCA |
| BP | GO:0010051 | xylem and phloem pattern formation | IEP | HCCA |
| BP | GO:0010098 | suspensor development | IEP | HCCA |
| BP | GO:0010212 | response to ionizing radiation | IEP | HCCA |
| BP | GO:0010222 | stem vascular tissue pattern formation | IEP | HCCA |
| BP | GO:0010332 | response to gamma radiation | IEP | HCCA |
| BP | GO:0010588 | cotyledon vascular tissue pattern formation | IEP | HCCA |
| BP | GO:0032200 | telomere organization | IEP | HCCA |
| BP | GO:0032204 | regulation of telomere maintenance | IEP | HCCA |
| BP | GO:0032504 | multicellular organism reproduction | IEP | HCCA |
| BP | GO:0042138 | meiotic DNA double-strand break formation | IEP | HCCA |
| MF | GO:0042803 | protein homodimerization activity | IEP | HCCA |
| BP | GO:0043247 | telomere maintenance in response to DNA damage | IEP | HCCA |
| MF | GO:0045735 | nutrient reservoir activity | IEP | HCCA |
| BP | GO:0048598 | embryonic morphogenesis | IEP | HCCA |
| BP | GO:0070192 | chromosome organization involved in meiotic cell cycle | IEP | HCCA |
| BP | GO:0080159 | zygote elongation | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000070 | Pectinesterase_cat | 34 | 321 |
| No external refs found! |
