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  5. AT3G25060

AT3G25060


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G25060

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.05 OrthoFinder output from all 47 species
AT1G31010 OSB4 organellar single-stranded DNA binding protein 4 0.03 OrthoFinder output from all 47 species
Adi_g101227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07701 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34588 MEF22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30504 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08304 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0019.g015073 No alias not classified & original description: CDS=1-2832 0.03 OrthoFinder output from all 47 species
Cba_g05272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G028200.1 OTP84, Ceric.02G028200 not classified & original description: pacid=50583866... 0.04 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.05 OrthoFinder output from all 47 species
Ceric.09G066700.1 Ceric.09G066700 not classified & original description: pacid=50588343... 0.03 OrthoFinder output from all 47 species
Ceric.10G015400.1 CRR22, Ceric.10G015400 not classified & original description: pacid=50611867... 0.04 OrthoFinder output from all 47 species
Ceric.12G021300.1 Ceric.12G021300 not classified & original description: pacid=50600778... 0.04 OrthoFinder output from all 47 species
Ceric.13G010900.1 Ceric.13G010900 not classified & original description: pacid=50636623... 0.03 OrthoFinder output from all 47 species
Ceric.17G033700.1 VAC1, ECB2,... not classified & original description: pacid=50617387... 0.04 OrthoFinder output from all 47 species
Ceric.20G008800.1 Ceric.20G008800 not classified & original description: pacid=50566037... 0.04 OrthoFinder output from all 47 species
Ceric.21G042400.1 Ceric.21G042400 not classified & original description: pacid=50602832... 0.04 OrthoFinder output from all 47 species
Ceric.22G073800.1 Ceric.22G073800 not classified & original description: pacid=50614043... 0.04 OrthoFinder output from all 47 species
Ceric.28G027300.1 CRR22, Ceric.28G027300 not classified & original description: pacid=50569783... 0.06 OrthoFinder output from all 47 species
Ceric.28G056200.1 Ceric.28G056200 not classified & original description: pacid=50570685... 0.03 OrthoFinder output from all 47 species
Ceric.29G070600.1 Ceric.29G070600 not classified & original description: pacid=50625806... 0.03 OrthoFinder output from all 47 species
Ceric.30G001600.1 Ceric.30G001600 not classified & original description: pacid=50608965... 0.05 OrthoFinder output from all 47 species
Ceric.30G023200.1 Ceric.30G023200 not classified & original description: pacid=50609019... 0.04 OrthoFinder output from all 47 species
Dac_g45717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g24017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g01115.1 LOC_Os01g01115 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.05 OrthoFinder output from all 47 species
LOC_Os02g07050.1 LOC_Os02g07050 Pentatricopeptide repeat-containing protein At4g20770... 0.04 OrthoFinder output from all 47 species
LOC_Os03g13230.1 LOC_Os03g13230 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
LOC_Os07g05560.1 LOC_Os07g05560 Pentatricopeptide repeat-containing protein At4g21065... 0.07 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
LOC_Os09g15800.1 LOC_Os09g15800 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
LOC_Os09g24640.1 REME1, LOC_Os09g24640 Pentatricopeptide repeat-containing protein At2g36730... 0.04 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Lfl_g06204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_122899g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_14381g0010 EMB2758 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_179801g0020 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_43615g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_794605g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_89214g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_916566g0010 OTP82 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Msp_g38043 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g39221 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06277 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g41047 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16487 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25325 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g44172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo34484 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 OrthoFinder output from all 47 species
Tin_g22900 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46233 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 314
IPR002885 Pentatricopeptide_repeat 457 478
IPR002885 Pentatricopeptide_repeat 256 279
IPR002885 Pentatricopeptide_repeat 184 213
IPR002885 Pentatricopeptide_repeat 153 181
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 80 126
No external refs found!