Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink).
Gene families : OG0001823 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001823_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G25680 | |
| Cluster | HCCA: Cluster_79 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00147p00073200 | evm_27.TU.AmTr_v1... | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g017446 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g26067 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01028918001 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g40014 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g21380 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| CC | GO:0009507 | chloroplast | IDA | Interproscan |
| CC | GO:0009507 | chloroplast | ISM | Interproscan |
| CC | GO:0009536 | plastid | IDA | Interproscan |
| CC | GO:0009941 | chloroplast envelope | IDA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006497 | protein lipidation | IEP | HCCA |
| BP | GO:0006498 | N-terminal protein lipidation | IEP | HCCA |
| BP | GO:0006499 | N-terminal protein myristoylation | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| CC | GO:0009543 | chloroplast thylakoid lumen | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0018377 | protein myristoylation | IEP | HCCA |
| BP | GO:0030422 | siRNA processing | IEP | HCCA |
| CC | GO:0031359 | obsolete integral component of chloroplast outer membrane | IEP | HCCA |
| BP | GO:0031365 | N-terminal protein amino acid modification | IEP | HCCA |
| BP | GO:0031425 | chloroplast RNA processing | IEP | HCCA |
| BP | GO:0031426 | polycistronic mRNA processing | IEP | HCCA |
| CC | GO:0031977 | thylakoid lumen | IEP | HCCA |
| CC | GO:0031978 | plastid thylakoid lumen | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0035196 | miRNA processing | IEP | HCCA |
| BP | GO:0040034 | regulation of development, heterochronic | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043687 | post-translational protein modification | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046777 | protein autophosphorylation | IEP | HCCA |
| BP | GO:0048481 | plant ovule development | IEP | HCCA |
| BP | GO:0048506 | regulation of timing of meristematic phase transition | IEP | HCCA |
| BP | GO:0048509 | regulation of meristem development | IEP | HCCA |
| BP | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | IEP | HCCA |
| BP | GO:0070918 | regulatory ncRNA processing | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001119 | SLH_dom | 243 | 293 |
| No external refs found! |
