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  5. Pnu_g30310

Pnu_g30310


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g30310

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00083p00015670 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g002444 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g008563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022409 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g032567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055145 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069152 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097033 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097993 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g098197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099248 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101228 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102144 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g104656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113425 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06657 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26948 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g31935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28532 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65851.t1 Aspi01Gene65851 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008304 OTP84 not classified & original description: CDS=1-2247 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024817 No alias not classified & original description: CDS=20-3643 0.03 OrthoFinder output from all 47 species
Azfi_s0166.g054406 No alias not classified & original description: CDS=1-3468 0.03 OrthoFinder output from all 47 species
Azfi_s0261.g060752 CRR22 not classified & original description: CDS=1-1500 0.03 OrthoFinder output from all 47 species
Azfi_s0652.g081079 No alias not classified & original description: CDS=1-2169 0.02 OrthoFinder output from all 47 species
Cba_g04634 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G041400.1 Ceric.01G041400 not classified & original description: pacid=50592429... 0.04 OrthoFinder output from all 47 species
Ceric.11G066400.1 Ceric.11G066400 not classified & original description: pacid=50596043... 0.03 OrthoFinder output from all 47 species
Ceric.13G039400.1 Ceric.13G039400 not classified & original description: pacid=50635903... 0.03 OrthoFinder output from all 47 species
Ceric.15G077000.1 EMB2261, Ceric.15G077000 not classified & original description: pacid=50639459... 0.05 OrthoFinder output from all 47 species
Ceric.19G066400.1 Ceric.19G066400 not classified & original description: pacid=50576354... 0.03 OrthoFinder output from all 47 species
Ceric.20G079900.1 CRR22, Ceric.20G079900 not classified & original description: pacid=50567064... 0.04 OrthoFinder output from all 47 species
Ceric.26G053700.1 Ceric.26G053700 not classified & original description: pacid=50599734... 0.06 OrthoFinder output from all 47 species
Ceric.29G055100.1 Ceric.29G055100 not classified & original description: pacid=50625141... 0.03 OrthoFinder output from all 47 species
Ceric.33G052800.1 Ceric.33G052800 not classified & original description: pacid=50607149... 0.03 OrthoFinder output from all 47 species
Ceric.36G051900.1 Ceric.36G051900 not classified & original description: pacid=50568048... 0.07 OrthoFinder output from all 47 species
Ceric.37G044800.1 Ceric.37G044800 not classified & original description: pacid=50617007... 0.03 OrthoFinder output from all 47 species
Ceric.37G053600.1 Ceric.37G053600 not classified & original description: pacid=50616731... 0.05 OrthoFinder output from all 47 species
Dac_g09912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05681 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08508 MEF21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25136 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02573 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_33335 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
LOC_Os08g06490.2 SLO1, LOC_Os08g06490 Pentatricopeptide repeat-containing protein At4g22760... 0.02 OrthoFinder output from all 47 species
LOC_Os09g24680.1 LOC_Os09g24680 Pentatricopeptide repeat-containing protein At1g74600,... 0.02 OrthoFinder output from all 47 species
Len_g25958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19657 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10311934g0010 MEF22 Pentatricopeptide repeat-containing protein At1g15510,... 0.02 OrthoFinder output from all 47 species
MA_104937g0010 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
MA_107356g0010 CRR2 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_114722g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_271639g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_465411g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_49292g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_5481g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
MA_84538g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Msp_g04488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35976 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g46080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16384 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02439 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03862 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04505 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04526 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04547 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06771 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g07950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12890 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15704 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15705 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g16161 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22807 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29797 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g29837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29840 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g29945 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g29969 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30095 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04624 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06423 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41025 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53562 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007447 No alias not classified & original description: CDS=108-3026 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016469 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2448 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026691 No alias not classified & original description: CDS=1-2898 0.03 OrthoFinder output from all 47 species
Sam_g11900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo130420 No alias Pentatricopeptide repeat-containing protein At4g19191,... 0.02 OrthoFinder output from all 47 species
Smo81698 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Solyc09g009790.4.1 Solyc09g009790 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g05105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10964 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Zm00001e015695_P001 Zm00001e015695 Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 21 69
IPR002885 Pentatricopeptide_repeat 325 372
IPR002885 Pentatricopeptide_repeat 427 475
IPR002885 Pentatricopeptide_repeat 223 271
IPR002885 Pentatricopeptide_repeat 628 675
IPR002885 Pentatricopeptide_repeat 122 170
IPR002885 Pentatricopeptide_repeat 527 574
No external refs found!