AT3G26560

Description : ATP-dependent RNA helicase, putative

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G26560
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00074370	EMB3011,...	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
AT1G27900	No alias	RNA helicase family protein	0.03	OrthoFinder output from all 47 species
AT2G35340	MEE29	helicase domain-containing protein	0.03	OrthoFinder output from all 47 species
Adi_g035436	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g060167	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g14240	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02597	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g08262	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Ala_g37436	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g04491	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g19131	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g29988	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07221	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Aop_g13922	EMB3011	RNA helicase *(Prp16) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g15706	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene72567.t1	Aspi01Gene72567	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.01G059500.1	Ceric.01G059500	not classified & original description: pacid=50591809...	0.09	OrthoFinder output from all 47 species
Ceric.15G036900.1	Ceric.15G036900	RNA helicase *(Prp22) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.21G075900.1	EMB3011, Ceric.21G075900	RNA helicase *(Prp16) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000842.2	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.27	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020531.53	EMB3011	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	OrthoFinder output from all 47 species
Cre07.g349100	ESP3, EMB2733	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Cre24.g755347	EMB3011	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
Dac_g20233	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g44524	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g13368	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g05654	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g18759	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Ehy_g25246	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007911001	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.04	OrthoFinder output from all 47 species
GSVIVT01029863001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.05	OrthoFinder output from all 47 species
LOC_Os08g24760.1	ESP3, EMB2733,...	RNA helicase (Prp2)	0.05	OrthoFinder output from all 47 species
Len_g08915	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g09738	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g05720	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g08910	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g34333	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10435486g0010	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.07	OrthoFinder output from all 47 species
MA_629782g0010	EMB3011	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.05	OrthoFinder output from all 47 species
Mp2g13680.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.07	OrthoFinder output from all 47 species
Mp4g02780.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Mp7g03460.1	EMB3011	RNA helicase (Prp16)	0.02	OrthoFinder output from all 47 species
Msp_g15088	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g07572	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g21732	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10443	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42990	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g44705	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g07808	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Pir_g17419	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g66576	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g26832	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Ppi_g04698	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g05341	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001017	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Sam_g14599	No alias	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16823	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Sam_g29503	No alias	RNA helicase *(Prp22) & original description: none	0.04	OrthoFinder output from all 47 species
Smo233605	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Smo76120	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Smo82212	ESP3, EMB2733	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Solyc07g039550.4.1	Solyc07g039550	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.06	OrthoFinder output from all 47 species
Solyc10g076910.2.1	EMB3011, Solyc10g076910	RNA helicase (Prp16)	0.04	OrthoFinder output from all 47 species
Spa_g17882	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g25913	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g02893	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e001487_P003	Zm00001e001487	helicase Prp43 of Intron-Lariat Spliceosome complex	0.04	OrthoFinder output from all 47 species
Zm00001e014112_P001	Zm00001e014112	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.05	OrthoFinder output from all 47 species
Zm00001e022095_P001	ESP3, EMB2733,...	RNA helicase (Prp2)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000226	microtubule cytoskeleton organization	RCA	Interproscan
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006486	protein glycosylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
CC	GO:0030054	cell junction	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070085	glycosylation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009691	cytokinin biosynthetic process	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016783	sulfurtransferase activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0031071	cysteine desulfurase activity	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	521	671
IPR001650	Helicase_C	713	845
IPR007502	Helicase-assoc_dom	907	995
IPR003029	S1_domain	213	281
IPR011709	DEAD-box_helicase_OB_fold	1053	1128

External Links

No external refs found!

AT3G26560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation