AT3G27010 (AT-TCP20, TCP20, PCF1, ATTCP20)

Aliases : AT-TCP20, TCP20, PCF1, ATTCP20

Description : TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20

Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G27010
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00040760	evm_27.TU.AmTr_v1...	Multi-process regulation.circadian clock.morning element...	0.06	OrthoFinder output from all 47 species
AT2G45680	No alias	TCP family transcription factor	0.04	OrthoFinder output from all 47 species
AT5G08330	No alias	TCP family transcription factor	0.03	OrthoFinder output from all 47 species
Adi_g007407	AT-TCP20, TCP20,...	circAdian clock activation factor *(TCP20) & original...	0.02	OrthoFinder output from all 47 species
Adi_g055980	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g074351	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086308	No alias	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g03271	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene72040.t1	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g15454	No alias	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07691	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g26686	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os01g14380.1	LOC_Os01g14380	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os12g07480.1	LOC_Os12g07480	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
MA_81710g0010	No alias	transcription factor (TCP)	0.04	OrthoFinder output from all 47 species
Nbi_g24235	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g006800.1.1	Solyc03g006800	transcription factor (TCP)	0.04	OrthoFinder output from all 47 species
Solyc04g009180.3.1	Solyc04g009180	transcription factor (TCP). CHE circadian clock repression factor	0.03	OrthoFinder output from all 47 species
Solyc05g007420.2.1	Solyc05g007420	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
Solyc09g008030.1.1	Solyc09g008030	transcription factor (TCP)	0.04	OrthoFinder output from all 47 species
Zm00001e023066_P001	Zm00001e023066	transcription factor (TCP). CHE circadian clock repression factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IDA	Interproscan
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008361	regulation of cell size	IGI	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IPI	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090066	regulation of anatomical structure size	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1900055	regulation of leaf senescence	None	Extended
BP	GO:1900056	negative regulation of leaf senescence	IGI	Interproscan
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006569	tryptophan catabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009643	photosynthetic acclimation	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
CC	GO:0012505	endomembrane system	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0030276	clathrin binding	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042436	indole-containing compound catabolic process	IEP	HCCA
BP	GO:0042446	hormone biosynthetic process	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017887	TF_TCP_subgr	77	256

External Links

No external refs found!

AT3G27010 (AT-TCP20, TCP20, PCF1, ATTCP20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation