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AT3G27550


Description : RNA-binding CRS1 / YhbY (CRM) domain protein


Gene families : OG0001914 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001914_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G27550

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01010789001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 OrthoFinder output from all 47 species
Gb_39033 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.05 OrthoFinder output from all 47 species
LOC_Os05g05300.1 LOC_Os05g05300 Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species
LOC_Os06g20030.1 LOC_Os06g20030 Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species
Len_g19656 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436523g0010 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species
Pir_g66193 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g29576 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49602 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g014280.2.1 Solyc12g014280 Uncharacterized CRM domain-containing protein At3g25440,... 0.03 OrthoFinder output from all 47 species
Spa_g10764 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19478 No alias Hsp60-co-chaperone *(Hsp10) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027517_P001 Zm00001e027517 Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
MF GO:0034046 poly(G) binding IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 93 176
No external refs found!