AT3G27920 (ATMYB0, ATGL1, GL1, MYB0)

Aliases : ATMYB0, ATGL1, GL1, MYB0

Description : myb domain protein 0

Gene families : OG0000015 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G27920
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00050350	MYB49, AtMYB49,...	Transcription factor MYB74 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT3G01530	MYB57, ATMYB57	myb domain protein 57	0.03	OrthoFinder output from all 47 species
AT3G30210	MYB121, ATMYB121	myb domain protein 121	0.04	OrthoFinder output from all 47 species
AT4G05100	AtMYB74, MYB74	myb domain protein 74	0.03	OrthoFinder output from all 47 species
Aev_g22400	MYB86, ATMYB86	MYB class-R2R3 subgroup-13 transcription factor &...	0.03	OrthoFinder output from all 47 species
Aev_g38849	AtMYB50, MYB50	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g41043	ATMIXTA, MYB16, ATMYB16	MYB class-R2R3 subgroup-8 transcription factor &...	0.04	OrthoFinder output from all 47 species
Aop_g17526	AtMYB50, MYB50	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g19361	AtMYB50, MYB50	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene67192.t1	ATMIXTA, MYB16,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene67210.t1	ATMIXTA, MYB16,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g21726	ATMIXTA, MYB16, ATMYB16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01000449001	ATMYB15, ATY19, MYB15	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
GSVIVT01028091001	ATMYB12, PFG1, MYB12	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
Gb_29933	MYB7, ATY49, ATMYB7	transcription factor (MYB)	0.04	OrthoFinder output from all 47 species
LOC_Os02g40530.1	MYB305, ATMYB71,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
LOC_Os03g04900.1	MYB305, ATMYB71,...	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
LOC_Os07g43580.1	MYB30, ATMYB30,...	transcription factor (MYB)	0.04	OrthoFinder output from all 47 species
MA_128871g0010	AtMYB20, MYB20	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
MA_246142g0010	ATMYB4, MYB4	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
MA_81763g0010	ATMYB4, MYB4	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
Ore_g25108	MYB103, AtMYB103	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g23759	ATY53, ATMYB67, MYB67	MYB class-R2R3 subgroup-13 transcription factor &...	0.03	OrthoFinder output from all 47 species
Pir_g27849	ATMYB5, MYB5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g28265	ATMYB61, MYB61	MYB class-R2R3 subgroup-13 transcription factor &...	0.03	OrthoFinder output from all 47 species
Pir_g41293	MYB7, ATY49, ATMYB7	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17793	ATMYB101, MYB101, ATM1	MYB class-R2R3 subgroup-18 transcription factor &...	0.03	OrthoFinder output from all 47 species
Pnu_g25158	MYB8, HOS10	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g26801	ATMYB101, MYB101, ATM1	MYB class-R2R3 subgroup-18 transcription factor &...	0.02	OrthoFinder output from all 47 species
Ppi_g25791	ATMYB61, MYB61	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g63855	ATMYB46, MYB46	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000870	ATMYB4, MYB4	not classified & original description: CDS=1-1719	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018975	ATMIXTA, MYB16, ATMYB16	not classified & original description: CDS=1-1983	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020639	MYB86, ATMYB86	not classified & original description: CDS=364-678	0.03	OrthoFinder output from all 47 species
Solyc03g116100.3.1	MYBCOV1, MYB96,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Solyc10g086260.3.1	AtMYB113,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Spa_g04302	AtMYB20, MYB20	MYB class-R2R3 transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001803_P001	AtMYB50, MYB50,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Zm00001e004140_P002	ATMIXTA, MYB16,...	transcription factor (MYB)	0.02	OrthoFinder output from all 47 species
Zm00001e007422_P001	AtMYB17, MYB17,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Zm00001e026426_P001	MYB86, ATMYB86,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Zm00001e030961_P001	AtMYB85, MYB85,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species
Zm00001e037956_P001	ATMYB94,...	transcription factor (MYB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	IMP	Interproscan
BP	GO:0001708	cell fate specification	RCA	Interproscan
BP	GO:0003002	regionalization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	TAS	Interproscan
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007267	cell-cell signaling	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009740	gibberellic acid mediated signaling pathway	TAS	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009913	epidermal cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0023052	signaling	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030855	epithelial cell differentiation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	IMP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045168	cell-cell signaling involved in cell fate commitment	None	Extended
BP	GO:0048629	trichome patterning	IMP	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0002213	defense response to insect	IEP	HCCA
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
BP	GO:0009786	regulation of asymmetric cell division	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0010052	guard cell differentiation	IEP	HCCA
BP	GO:0010374	stomatal complex development	IEP	HCCA
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
CC	GO:0019897	extrinsic component of plasma membrane	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0090558	plant epidermis development	IEP	HCCA
BP	GO:2000038	regulation of stomatal complex development	IEP	HCCA
BP	GO:2000122	negative regulation of stomatal complex development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	69	114
IPR001005	SANT/Myb	16	63

External Links

No external refs found!

AT3G27920 (ATMYB0, ATGL1, GL1, MYB0)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation