AT3G46790 (CRR2)

Aliases : CRR2

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G46790
Cluster	HCCA: Cluster_79

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00266560	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00029p00042600	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g33680...	0.03	OrthoFinder output from all 47 species
AMTR_s00031p00067070	emb1899, EMB175, EMB166	Pentatricopeptide repeat-containing protein At5g03800...	0.03	OrthoFinder output from all 47 species
AMTR_s00039p00023570	EMB2758	Pentatricopeptide repeat-containing protein At4g33990...	0.03	OrthoFinder output from all 47 species
AMTR_s00049p00210350	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.04	OrthoFinder output from all 47 species
AMTR_s00061p00127300	MEF22,...	Pentatricopeptide repeat-containing protein At3g12770...	0.03	OrthoFinder output from all 47 species
Adi_g003168	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g003262	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g004476	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g004477	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g005611	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g006931	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g008014	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g008563	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g011101	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g016117	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g023027	OTP86	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g032567	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g033133	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g033814	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g035018	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g035023	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g039747	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g055145	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g057083	EMB2758	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057658	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g065393	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g067856	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g069188	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g075582	EMB2758	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g079527	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g082577	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086259	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g099240	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g099295	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g101197	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g101214	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g111634	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g11263	OSB3	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g16829	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g17265	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g24743	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g36208	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g36503	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g38174	No alias	ssDNA-binding protein *(OSB) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g06995	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g19869	LPA66	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g26399	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30789	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g30828	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g17692	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g36436	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g57040	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g70449	DOT4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene01906.t1	Aspi01Gene01906	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene45825.t1	Aspi01Gene45825	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene61596.t2	CRR22, Aspi01Gene61596	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000731	No alias	not classified & original description: CDS=1-3192	0.03	OrthoFinder output from all 47 species
Azfi_s0004.g008305	VAC1, ECB2, ATECB2	ssDNA-binding protein *(OSB) & original description: CDS=82-2724	0.03	OrthoFinder output from all 47 species
Azfi_s0033.g025053	VAC1, ECB2, ATECB2	not classified & original description: CDS=1-2580	0.03	OrthoFinder output from all 47 species
Azfi_s0054.g033714	CRR22	not classified & original description: CDS=1-1803	0.03	OrthoFinder output from all 47 species
Azfi_s0210.g058082	No alias	not classified & original description: CDS=1-2637	0.03	OrthoFinder output from all 47 species
Cba_g14997	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g19903	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g20235	VAC1, ECB2, ATECB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g25034	VAC1, ECB2, ATECB2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g35112	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g35192	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g45006	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g45732	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g67841	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.10G047500.1	Ceric.10G047500	not classified & original description: pacid=50612222...	0.03	OrthoFinder output from all 47 species
Ceric.14G013000.1	Ceric.14G013000	not classified & original description: pacid=50634838...	0.03	OrthoFinder output from all 47 species
Ceric.30G023200.1	Ceric.30G023200	not classified & original description: pacid=50609019...	0.03	OrthoFinder output from all 47 species
Ceric.32G026500.1	CRR2, Ceric.32G026500	not classified & original description: pacid=50597944...	0.04	OrthoFinder output from all 47 species
Dac_g04671	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g05525	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g15555	LOI1, MEF11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g16704	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g22073	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g30166	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04093	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g21230	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04388	VAC1, ECB2, ATECB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g04921	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g04948	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g05887	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g05888	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g22123	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g22326	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g22330	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g22352	VAC1, ECB2, ATECB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g22635	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g23588	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g23591	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g25105	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g26478	OTP86	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g26547	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g26771	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g28702	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g36038	MEF19	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g41966	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g46783	REME1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04950	EMB2758	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_33335	CRR22	Pentatricopeptide repeat-containing protein DOT4,...	0.03	OrthoFinder output from all 47 species
Gb_35190	CRR22	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	OrthoFinder output from all 47 species
Len_g18960	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g24399	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10311934g0010	MEF22	Pentatricopeptide repeat-containing protein At1g15510,...	0.03	OrthoFinder output from all 47 species
MA_30949g0010	OTP84	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	OrthoFinder output from all 47 species
Msp_g23173	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g28215	EMB2758	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g31404	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g41100	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Msp_g41204	No alias	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g42789	DOT4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g06317	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g06586	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g14034	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g20499	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g28131	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g38695	No alias	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g41721	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g16678	REME1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g37890	No alias	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g15700	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g06451	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g07453	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g53376	No alias	ssDNA-binding protein *(OSB) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g53382	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g56244	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g57817	No alias	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g03326	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g14712	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16575	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g30207	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g30280	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g37838	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g38417	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo96437	No alias	Pentatricopeptide repeat-containing protein At5g56310...	0.03	OrthoFinder output from all 47 species
Smo99756	No alias	Pentatricopeptide repeat-containing protein At2g39620...	0.03	OrthoFinder output from all 47 species
Solyc09g015370.1.1	Solyc09g015370	Pentatricopeptide repeat-containing protein At2g27610...	0.03	OrthoFinder output from all 47 species
Spa_g15016	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g16702	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g26191	EMB2261	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g45306	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g54669	MEF9	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g08462	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g17887	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001038_P001	CRR2, Zm00001e001038	Pentatricopeptide repeat-containing protein At1g08070,...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
CC	GO:0009507	chloroplast	ISS	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030422	siRNA processing	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IMP	Interproscan
BP	GO:0031426	polycistronic mRNA processing	IMP	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035196	miRNA processing	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070918	regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	523	647
IPR002885	Pentatricopeptide_repeat	50	70
IPR002885	Pentatricopeptide_repeat	425	450
IPR002885	Pentatricopeptide_repeat	145	174
IPR002885	Pentatricopeptide_repeat	246	296
IPR002885	Pentatricopeptide_repeat	350	397

External Links

No external refs found!

AT3G46790 (CRR2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation