AT3G47870 (LBD27, SCP)

Aliases : LBD27, SCP

Description : LOB domain-containing protein 27

Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G47870

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00041p00044170	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.02	OrthoFinder output from all 47 species
AT1G06280	LBD2	LOB domain-containing protein 2	0.04	OrthoFinder output from all 47 species
AT1G65620	AS2	Lateral organ boundaries (LOB) domain family protein	0.04	OrthoFinder output from all 47 species
AT2G45420	LBD18	LOB domain-containing protein 18	0.03	OrthoFinder output from all 47 species
AT3G03760	LBD20	LOB domain-containing protein 20	0.03	OrthoFinder output from all 47 species
AT3G50510	LBD28	LOB domain-containing protein 28	0.11	OrthoFinder output from all 47 species
Adi_g052431	LBD4	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g04915	AS2	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene41937.t1	AS2, Aspi01Gene41937	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene65362.t1	AS2, Aspi01Gene65362	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g42517	LBD15, ASL11	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g06562	LBD15, ASL11	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g06666	LOB	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g25272	LBD15, ASL11	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g29091	LBD15, ASL11	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g46319	LBD20	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12391	LBD25	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01006269001	No alias	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.03	OrthoFinder output from all 47 species
GSVIVT01027621001	LBD18	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.03	OrthoFinder output from all 47 species
GSVIVT01029979001	LBD20	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.03	OrthoFinder output from all 47 species
GSVIVT01032592001	LBD27, SCP	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.03	OrthoFinder output from all 47 species
LOC_Os01g14030.1	LBD2, LOC_Os01g14030	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
LOC_Os01g56530.1	LBD20, LOC_Os01g56530	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
LOC_Os03g05500.1	LBD29, ASL16,...	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
LOC_Os03g17810.1	LBD11, LOC_Os03g17810	transcription factor (AS2/LOB)	0.02	OrthoFinder output from all 47 species
LOC_Os10g07510.1	LBD18, LOC_Os10g07510	transcription factor (AS2/LOB)	0.02	OrthoFinder output from all 47 species
MA_126761g0010	LBD20	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
MA_61242g0010	LBD25	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
Msp_g43952	LBD15, ASL11	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g44204	LBD15, ASL11	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g21903	LBD22	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g22342	LBD27, SCP	AS2/LOB-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g24707	LBD22	AS2/LOB-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g16452	LBD15, ASL11	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0120.g021394	AS2	AS2/LOB-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc02g087570.1.1	LBD27, SCP,...	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
Solyc03g113360.4.1	LBD27, SCP,...	transcription factor (AS2/LOB)	0.05	OrthoFinder output from all 47 species
Tin_g12549	LBD4	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e000390_P001	LBD29, ASL16,...	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
Zm00001e001031_P001	LBD18, Zm00001e001031	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
Zm00001e019686_P001	LBD20, Zm00001e019686	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
Zm00001e030195_P001	LBD2, Zm00001e030195	transcription factor (AS2/LOB)	0.02	OrthoFinder output from all 47 species
Zm00001e038981_P001	Zm00001e038981	transcription factor (AS2/LOB)	0.01	OrthoFinder output from all 47 species
Zm00001e042444_P001	LBD29, ASL16,...	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009556	microsporogenesis	IMP	Interproscan
BP	GO:0009786	regulation of asymmetric cell division	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034293	sexual sporulation	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043934	sporulation	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048236	plant-type sporogenesis	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051302	regulation of cell division	None	Extended
BP	GO:0051321	meiotic cell cycle	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004565	beta-galactosidase activity	IEP	HCCA
MF	GO:0004708	MAP kinase kinase activity	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0015398	high-affinity secondary active ammonium transmembrane transporter activity	IEP	HCCA
BP	GO:0015695	organic cation transport	IEP	HCCA
MF	GO:0015925	galactosidase activity	IEP	HCCA
BP	GO:0072488	ammonium transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004883	LOB	36	133

External Links

No external refs found!

AT3G47870 (LBD27, SCP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation