Description : peptidoglycan-binding LysM domain-containing protein
Gene families : OG0003208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003208_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G52790 | |
| Cluster | HCCA: Cluster_25 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00040p00156520 | evm_27.TU.AmTr_v1... | No description available | 0.07 | OrthoFinder output from all 47 species | |
| AT5G62150 | No alias | peptidoglycan-binding LysM domain-containing protein | 0.08 | OrthoFinder output from all 47 species | |
| Aspi01Gene11452.t1 | Aspi01Gene11452 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.02G111400.1 | Ceric.02G111400 | not classified & original description: pacid=50586243... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.1Z233900.1 | Ceric.1Z233900 | not classified & original description: pacid=50628265... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g16461 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g24473 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Gb_39268 | No alias | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| Len_g06968 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10325924g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| MA_157865g0010 | AAc1, ACT1 | Actin-1 OS=Oryza sativa subsp. indica... | 0.05 | OrthoFinder output from all 47 species | |
| MA_427792g0010 | No alias | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| MA_7790149g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| MA_8389288g0010 | No alias | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g20364 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g55751 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g083410.1.1 | Solyc10g083410 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| BP | GO:0016998 | cell wall macromolecule catabolic process | ISS | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000041 | transition metal ion transport | IEP | HCCA |
| MF | GO:0004620 | phospholipase activity | IEP | HCCA |
| BP | GO:0006869 | lipid transport | IEP | HCCA |
| BP | GO:0007043 | cell-cell junction assembly | IEP | HCCA |
| MF | GO:0008289 | lipid binding | IEP | HCCA |
| BP | GO:0009561 | megagametogenesis | IEP | HCCA |
| BP | GO:0009698 | phenylpropanoid metabolic process | IEP | HCCA |
| BP | GO:0009699 | phenylpropanoid biosynthetic process | IEP | HCCA |
| BP | GO:0009806 | lignan metabolic process | IEP | HCCA |
| BP | GO:0009807 | lignan biosynthetic process | IEP | HCCA |
| BP | GO:0009808 | lignin metabolic process | IEP | HCCA |
| BP | GO:0009809 | lignin biosynthetic process | IEP | HCCA |
| BP | GO:0010167 | response to nitrate | IEP | HCCA |
| BP | GO:0010311 | lateral root formation | IEP | HCCA |
| BP | GO:0010383 | cell wall polysaccharide metabolic process | IEP | HCCA |
| BP | GO:0010410 | hemicellulose metabolic process | IEP | HCCA |
| BP | GO:0010413 | glucuronoxylan metabolic process | IEP | HCCA |
| BP | GO:0015698 | inorganic anion transport | IEP | HCCA |
| BP | GO:0015706 | nitrate transmembrane transport | IEP | HCCA |
| BP | GO:0030001 | metal ion transport | IEP | HCCA |
| CC | GO:0031225 | obsolete anchored component of membrane | IEP | HCCA |
| BP | GO:0034329 | cell junction assembly | IEP | HCCA |
| BP | GO:0034330 | cell junction organization | IEP | HCCA |
| BP | GO:0044038 | cell wall macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0044550 | secondary metabolite biosynthetic process | IEP | HCCA |
| BP | GO:0045216 | cell-cell junction organization | IEP | HCCA |
| BP | GO:0045491 | xylan metabolic process | IEP | HCCA |
| BP | GO:0045492 | xylan biosynthetic process | IEP | HCCA |
| MF | GO:0045735 | nutrient reservoir activity | IEP | HCCA |
| CC | GO:0048226 | Casparian strip | IEP | HCCA |
| BP | GO:0055085 | transmembrane transport | IEP | HCCA |
| BP | GO:0070589 | cellular component macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0070592 | cell wall polysaccharide biosynthetic process | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098661 | inorganic anion transmembrane transport | IEP | HCCA |
| BP | GO:1902025 | nitrate import | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR018392 | LysM_dom | 64 | 105 |
| No external refs found! |
