AT3G53430

Description : Ribosomal protein L11 family protein

Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53430

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	OrthoFinder output from all 47 species
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Adi_g063886	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Adi_g116841	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g29977	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ala_g38012	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Als_g04839	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Als_g10325	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Als_g50372	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g62499	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g06826	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Aop_g52643	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aop_g70967	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Azfi_s0004.g008501	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0279.g062260	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g23997	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.15G067600.1	Ceric.15G067600	component *(uL11) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Ceric.23G070600.1	Ceric.23G070600	component *(uL11) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001339.27	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
Cre12.g528750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	OrthoFinder output from all 47 species
Dac_g01966	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g34940	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
GSVIVT01025189001	No alias	No description available	0.22	OrthoFinder output from all 47 species
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
LOC_Os02g47140.1	LOC_Os02g47140	component RPL12 of LSU proteome component	0.21	OrthoFinder output from all 47 species
LOC_Os04g50990.1	LOC_Os04g50990	component RPL12 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Len_g03570	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Len_g13594	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g22014	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g36573	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.22	OrthoFinder output from all 47 species
Msp_g37966	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Msp_g45524	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Nbi_g12624	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g02380	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g02937	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c15_14410V3.1	Pp3c15_14410	Ribosomal protein L11 family protein	0.15	OrthoFinder output from all 47 species
Pp3c6_19290V3.1	Pp3c6_19290	Ribosomal protein L11 family protein	0.1	OrthoFinder output from all 47 species
Ppi_g06745	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g23184	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ppi_g28177	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g39860	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g02646	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g05606	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g40646	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Smo227409	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Solyc06g075180.1.1	Solyc06g075180	component RPL12 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Solyc11g065670.1.1	Solyc11g065670	component RPL12 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Solyc11g069440.1.1	Solyc11g069440	component RPL12 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Spa_g04458	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Spa_g04459	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g06495	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Spa_g22192	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g36914	No alias	component *(uL11) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e007067_P001	Zm00001e007067	component RPL12 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e008316_P001	Zm00001e008316	component RPL12 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Zm00001e023297_P001	Zm00001e023297	component RPL12 of LSU proteome component	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022625	cytosolic large ribosomal subunit	ISS	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008143	poly(A) binding	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
MF	GO:0070717	poly-purine tract binding	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020783	Ribosomal_L11_C	75	144
IPR020784	Ribosomal_L11_N	12	70

External Links

No external refs found!

AT3G53430

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation