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  5. AT3G56070

AT3G56070 (ROC2)


Aliases : ROC2

Description : rotamase cyclophilin 2


Gene families : OG0000219 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G56070
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00179330 ROC2,... Protein modification.protein folding and quality... 0.06 OrthoFinder output from all 47 species
Adi_g016344 No alias EC_5.2 cis-trans-isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g017075 No alias EC_5.2 cis-trans-isomerase & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g089449 No alias EC_5.2 cis-trans-isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12365 No alias EC_5.2 cis-trans-isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13368 No alias EC_5.2 cis-trans-isomerase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g62881 ATCYP20-2, CYP20-2 EC_5.2 cis-trans-isomerase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene06523.t2 ROC1, Aspi01Gene06523 EC_5.2 cis-trans-isomerase & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene11849.t1 Aspi01Gene11849 EC_5.2 cis-trans-isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene47479.t1 ROC4, Aspi01Gene47479 EC_5.2 cis-trans-isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0176.g056010 ATCYP20-2, CYP20-2 EC_5.2 cis-trans-isomerase & original description: CDS=207-734 0.09 OrthoFinder output from all 47 species
Cba_g12065 No alias EC_5.2 cis-trans-isomerase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12199 ROC5, ATCYP1 EC_5.2 cis-trans-isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G059600.1 ROC7, Ceric.10G059600 EC_5.2 cis-trans-isomerase & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.94 ROC5, ATCYP1 Protein modification.protein folding and quality... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.49 ATCYP20-2, CYP20-2 Protein modification.protein folding and quality... 0.02 OrthoFinder output from all 47 species
Cre01.g002300 No alias Protein modification.protein folding and quality... 0.03 OrthoFinder output from all 47 species
Dde_g04170 ROC2 EC_5.2 cis-trans-isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Gb_38344 No alias protein folding catalyst 0.04 OrthoFinder output from all 47 species
Gb_41343 ROC3 protein folding catalyst 0.02 OrthoFinder output from all 47 species
LOC_Os09g39780.2 ROC2, LOC_Os09g39780 protein folding catalyst 0.03 OrthoFinder output from all 47 species
Mp2g15770.1 No alias protein folding catalyst 0.02 OrthoFinder output from all 47 species
Nbi_g03408 ATCYP20-2, CYP20-2 EC_5.2 cis-trans-isomerase & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c24_9660V3.1 ATCYP20-2,... cyclophilin 20-2 0.01 OrthoFinder output from all 47 species
Ppi_g05661 No alias EC_5.2 cis-trans-isomerase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g38062 No alias EC_5.2 cis-trans-isomerase & original description: none 0.1 OrthoFinder output from all 47 species
Solyc11g006070.3.1 Solyc11g006070 protein folding catalyst 0.15 OrthoFinder output from all 47 species
Zm00001e032890_P001 ROC2, Zm00001e032890 protein folding catalyst 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005829 cytosol ISS Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006457 protein folding ISS Interproscan
BP GO:0007165 signal transduction ISS Interproscan
MF GO:0016018 cyclosporin A binding ISS Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004152 dihydroorotate dehydrogenase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006407 rRNA export from nucleus IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032870 cellular response to hormone stimulus IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
MF GO:0050897 cobalt ion binding IEP HCCA
BP GO:0051029 rRNA transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR002130 Cyclophilin-type_PPIase_dom 14 169
No external refs found!