AT3G57410 (ATVLN3, VLN3)

Aliases : ATVLN3, VLN3

Description : villin 3

Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G57410
Cluster	HCCA: Cluster_94

Target	Alias	Description	ECC score	Gene Family Method
Aev_g02570	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g12394	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g64699	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g64968	ATVLN3, VLN3	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Cre12.g524400	VLN4, ATVLN4	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g07151	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g04963	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g07820	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g33007	VLN4, ATVLN4	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pnu_g13066	ATVLN3, VLN3	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g22728	ATVLN3, VLN3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g54270	ATVLN3, VLN3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002599	VLN4, ATVLN4	villin actin-crosslinking factor & original description:...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003779	actin binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005884	actin filament	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006486	protein glycosylation	None	Extended
BP	GO:0006487	protein N-linked glycosylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	ISS	Interproscan
BP	GO:0007015	actin filament organization	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009832	plant-type cell wall biogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030029	actin filament-based process	None	Extended
BP	GO:0030243	cellulose metabolic process	RCA	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042546	cell wall biogenesis	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051014	actin filament severing	IDA	Interproscan
MF	GO:0051015	actin filament binding	IDA	Interproscan
BP	GO:0051017	actin filament bundle assembly	IDA	Interproscan
BP	GO:0051017	actin filament bundle assembly	IGI	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0061572	actin filament bundle organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0099081	supramolecular polymer	None	Extended
CC	GO:0099512	supramolecular fiber	None	Extended
CC	GO:0099513	polymeric cytoskeletal fiber	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0001708	cell fate specification	IEP	HCCA
MF	GO:0002020	protease binding	IEP	HCCA
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
MF	GO:0005217	intracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005221	intracellular cyclic nucleotide activated monoatomic cation channel activity	IEP	HCCA
MF	GO:0005223	intracellular cGMP-activated cation channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005262	calcium channel activity	IEP	HCCA
MF	GO:0005267	potassium channel activity	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006635	fatty acid beta-oxidation	IEP	HCCA
BP	GO:0006655	phosphatidylglycerol biosynthetic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009062	fatty acid catabolic process	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009636	response to toxic substance	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
BP	GO:0010082	regulation of root meristem growth	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010205	photoinhibition	IEP	HCCA
BP	GO:0010380	regulation of chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
BP	GO:0016042	lipid catabolic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019395	fatty acid oxidation	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
BP	GO:0030258	lipid modification	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034440	lipid oxidation	IEP	HCCA
BP	GO:0034605	cellular response to heat	IEP	HCCA
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0043155	negative regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
MF	GO:0043855	cyclic nucleotide-gated monoatomic ion channel activity	IEP	HCCA
BP	GO:0044242	cellular lipid catabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0070370	cellular heat acclimation	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071368	cellular response to cytokinin stimulus	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071483	cellular response to blue light	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
BP	GO:0080022	primary root development	IEP	HCCA
BP	GO:0080113	regulation of seed growth	IEP	HCCA
BP	GO:0090056	regulation of chlorophyll metabolic process	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
MF	GO:0099094	ligand-gated monoatomic cation channel activity	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1901401	regulation of tetrapyrrole metabolic process	IEP	HCCA
BP	GO:1901463	regulation of tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:1905156	negative regulation of photosynthesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003128	Villin_headpiece	930	965
IPR007123	Gelsolin-like_dom	635	713
IPR007123	Gelsolin-like_dom	153	205
IPR007123	Gelsolin-like_dom	270	337
IPR007123	Gelsolin-like_dom	413	483
IPR007123	Gelsolin-like_dom	29	111
IPR007123	Gelsolin-like_dom	533	601

External Links

No external refs found!

AT3G57410 (ATVLN3, VLN3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation