AT3G57800

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G57800

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00267570	UNE12,...	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
AMTR_s00013p00245920	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.05	OrthoFinder output from all 47 species
AMTR_s00133p00027110	BPEp, ZCW32,...	External stimuli response.light.UV-A/blue...	0.04	OrthoFinder output from all 47 species
AT3G07340	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.06	OrthoFinder output from all 47 species
AT3G21330	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G34530	CIB1	cryptochrome-interacting basic-helix-loop-helix 1	0.04	OrthoFinder output from all 47 species
Adi_g059845	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g08203	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ala_g10601	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g06024	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aob_g29567	CIB5	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aop_g21794	No alias	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene37755.t1	Aspi01Gene37755	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene59376.t1	HEC3, Aspi01Gene59376	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0043.g026959	No alias	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Azfi_s0056.g034172	No alias	regulatory protein (CIB) of blue light perception &...	0.06	OrthoFinder output from all 47 species
Azfi_s0104.g044857	SPT	bHLH-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Cba_g05248	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g08736	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g13645	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g34527	HEC2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g44419	RSL2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.16G026700.1	Ceric.16G026700	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Ceric.28G002800.1	Ceric.28G002800	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Dcu_g19533	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Dde_g12124	SPT	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g25483	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g29020	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
GSVIVT01008628001	No alias	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
GSVIVT01020814001	SRL2, PIF4, AtPIF4	External stimuli response.light.red/far red light.PIF...	0.04	OrthoFinder output from all 47 species
GSVIVT01023783001	CIB1	External stimuli response.light.UV-A/blue...	0.06	OrthoFinder output from all 47 species
GSVIVT01033356001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
LOC_Os01g68700.1	LOC_Os01g68700	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
LOC_Os03g10770.1	RSL2, LOC_Os03g10770	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
LOC_Os06g41060.1	LOC_Os06g41060	transcription factor (bHLH)	0.08	OrthoFinder output from all 47 species
LOC_Os09g25040.1	LRL1, LOC_Os09g25040	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os09g31300.1	LOC_Os09g31300	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os12g39850.1	RSL4, LOC_Os12g39850	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Lfl_g21546	UNE12	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Mp3g17350.1	SPT	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Msp_g25781	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42592	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g44492	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Pir_g10238	HEC1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g08374	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c16_21590V3.1	HEC2, Pp3c16_21590	ROOT HAIR DEFECTIVE 6-LIKE 2	0.01	OrthoFinder output from all 47 species
Ppi_g28847	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ppi_g33350	LRL3	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g48576	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ppi_g63750	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011925	HEC2	bHLH-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Smo443113	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Solyc02g062690.3.1	BEE2, Solyc02g062690	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	OrthoFinder output from all 47 species
Solyc03g034000.3.1	BEE2, Solyc03g034000	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Solyc03g119390.4.1	BEE3, Solyc03g119390	transcription factor (bHLH). transcriptional regulator (CIB)	0.05	OrthoFinder output from all 47 species
Solyc04g007300.4.1	BEE3, Solyc04g007300	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Solyc09g057710.4.1	Solyc09g057710	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Solyc09g097870.4.1	Solyc09g097870	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Spa_g10023	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Spa_g25566	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g47270	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g47496	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g50222	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g51778	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Zm00001e009823_P002	LRL1, Zm00001e009823	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e018857_P002	Zm00001e018857	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e020012_P001	Zm00001e020012	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
Zm00001e030519_P003	Zm00001e030519	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Zm00001e034605_P003	Zm00001e034605	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Zm00001e036318_P001	LRL1, Zm00001e036318	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000502	proteasome complex	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
CC	GO:0008180	COP9 signalosome	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0009269	response to desiccation	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009644	response to high light intensity	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010099	regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010114	response to red light	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010161	red light signaling pathway	IEP	HCCA
BP	GO:0010218	response to far red light	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051513	regulation of monopolar cell growth	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0071214	cellular response to abiotic stimulus	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
BP	GO:0071491	cellular response to red light	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
BP	GO:0104004	cellular response to environmental stimulus	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	214	245

External Links

No external refs found!

AT3G57800

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation