AT3G58190 (LBD29, ASL16)

Aliases : LBD29, ASL16

Description : lateral organ boundaries-domain 29

Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G58190

Target	Alias	Description	ECC score	Gene Family Method
AT1G16530	LBD3, ASL9	ASYMMETRIC LEAVES 2-like 9	0.05	OrthoFinder output from all 47 species
AT2G45410	LBD19	LOB domain-containing protein 19	0.04	OrthoFinder output from all 47 species
Adi_g060456	LBD31	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g085262	LOB	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g113714	LOB	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g28141	LBD4	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46359.t1	LBD4, Aspi01Gene46359	AS2/LOB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g45920	LBD15, ASL11	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.01G082500.1	LOB, Ceric.01G082500	AS2/LOB-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01016330001	LBD11	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.03	OrthoFinder output from all 47 species
GSVIVT01016332001	LBD11	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.06	OrthoFinder output from all 47 species
GSVIVT01016333001	LBD11	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.04	OrthoFinder output from all 47 species
Gb_20676	LBD1	transcription factor (AS2/LOB)	0.06	OrthoFinder output from all 47 species
Gb_25346	LBD4	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
Gb_38978	LBD15, ASL11	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
LOC_Os01g66590.2	AS2, LOC_Os01g66590	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
LOC_Os03g05500.1	LBD29, ASL16,...	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
LOC_Os03g17810.1	LBD11, LOC_Os03g17810	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
MA_136689g0010	LBD4	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
MA_170661g0010	LBD1	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
MA_445236g0010	LBD1	transcription factor (AS2/LOB)	0.02	OrthoFinder output from all 47 species
MA_61242g0010	LBD25	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
MA_66501g0010	LBD12, ASL5, PCK1	transcription factor (AS2/LOB)	0.05	OrthoFinder output from all 47 species
MA_88659g0010	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
MA_88711g0010	LBD25	transcription factor (AS2/LOB)	0.02	OrthoFinder output from all 47 species
MA_9839150g0010	LBD1	transcription factor (AS2/LOB)	0.02	OrthoFinder output from all 47 species
Ore_g25757	LBD4	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01746	LBD4	AS2/LOB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g063140.4.1	AS2, Solyc03g063140	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
Solyc06g083930.2.1	LBD16, ASL18,...	transcription factor (AS2/LOB)	0.09	OrthoFinder output from all 47 species
Solyc09g066260.4.1	LBD16, ASL18,...	transcription factor (AS2/LOB)	0.04	OrthoFinder output from all 47 species
Solyc09g066270.3.1	LBD29, ASL16,...	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
Solyc11g072470.3.1	LBD1, Solyc11g072470	transcription factor (AS2/LOB)	0.03	OrthoFinder output from all 47 species
Zm00001e016785_P005	LOB, Zm00001e016785	transcription factor (AS2/LOB)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009741	response to brassinosteroid	RCA	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010311	lateral root formation	IMP	Interproscan
BP	GO:0010583	response to cyclopentenone	RCA	Interproscan
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1905393	plant organ formation	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009692	ethylene metabolic process	IEP	HCCA
BP	GO:0009693	ethylene biosynthetic process	IEP	HCCA
BP	GO:0009830	cell wall modification involved in abscission	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010039	response to iron ion	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
BP	GO:0010432	bract development	IEP	HCCA
BP	GO:0010451	floral meristem growth	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
MF	GO:0016847	1-aminocyclopropane-1-carboxylate synthase activity	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0033473	indoleacetic acid conjugate metabolic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0035266	meristem growth	IEP	HCCA
BP	GO:0043449	cellular alkene metabolic process	IEP	HCCA
BP	GO:0043450	alkene biosynthetic process	IEP	HCCA
BP	GO:0044277	cell wall disassembly	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0071241	cellular response to inorganic substance	IEP	HCCA
BP	GO:0071248	cellular response to metal ion	IEP	HCCA
BP	GO:0071281	cellular response to iron ion	IEP	HCCA
MF	GO:0080030	methyl indole-3-acetate esterase activity	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
BP	GO:1900673	olefin metabolic process	IEP	HCCA
BP	GO:1900674	olefin biosynthetic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004883	LOB	11	109

External Links

No external refs found!

AT3G58190 (LBD29, ASL16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation