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AT3G58580


Description : DNAse I-like superfamily protein


Gene families : OG0002208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58580

Target Alias Description ECC score Gene Family Method Actions
Adi_g040892 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Adi_g059766 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Als_g15695 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000342.20 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Ehy_g16476 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01033442001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
LOC_Os03g07080.1 LOC_Os03g07080 deadenylase component CCR4 of CCR4-NOT complex 0.06 OrthoFinder output from all 47 species
LOC_Os10g27230.3 LOC_Os10g27230 deadenylase component CCR4 of CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Mp1g17770.1 No alias deadenylase component CCR4 of CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Ppi_g03915 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g18132 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
MF GO:0016787 hydrolase activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
CC GO:0000139 Golgi membrane IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
CC GO:0000502 proteasome complex IEP HCCA
BP GO:0001709 cell fate determination IEP HCCA
MF GO:0003756 protein disulfide isomerase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010152 pollen maturation IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
CC GO:0012505 endomembrane system IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0019953 sexual reproduction IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048867 stem cell fate determination IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080119 ER body organization IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR005135 Endo/exonuclease/phosphatase 254 587
No external refs found!