AT3G59060 (PIL6, PIF5)

Aliases : PIL6, PIF5

Description : phytochrome interacting factor 3-like 6

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G59060
Cluster	HCCA: Cluster_63

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00241810	CIB1,...	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
AMTR_s00079p00137860	BEE3,...	External stimuli response.light.UV-A/blue...	0.02	OrthoFinder output from all 47 species
AT4G02590	UNE12	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G37800	ATRSL1, RSL1	RHD SIX-LIKE 1	0.04	OrthoFinder output from all 47 species
Adi_g007889	LRL1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g036691	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g053074	ATRSL1, RSL1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g085081	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aev_g23312	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g18353	HEC1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g26066	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aob_g05211	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g18590	SPT	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g29424	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene01266.t1	SPT, Aspi01Gene01266	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene43314.t1	CIB1, Aspi01Gene43314	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene66676.t2	Aspi01Gene66676	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Azfi_s0083.g038807	HEC1	bHLH-type transcription factor & original description: CDS=1-1287	0.03	OrthoFinder output from all 47 species
Azfi_s0090.g042718	RSL2	bHLH-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Azfi_s0113.g045847	No alias	regulatory protein (CIB) of blue light perception &...	0.05	OrthoFinder output from all 47 species
Cba_g19851	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.22G036800.1	SPT, Ceric.22G036800	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.34G041700.1	PIF3, POC1,...	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.39G010000.1	LRL3, Ceric.39G010000	bHLH-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g09242	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g37679	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g17517	HEC3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g49282	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g02214	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g12124	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02749	PIL5, PIF1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03657	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g29606	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01013553001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	OrthoFinder output from all 47 species
GSVIVT01018164001	UNE10	Transcription factor UNE10 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
GSVIVT01018165001	UNE10	RNA biosynthesis.transcriptional activation.bHLH...	0.06	OrthoFinder output from all 47 species
GSVIVT01020814001	SRL2, PIF4, AtPIF4	External stimuli response.light.red/far red light.PIF...	0.04	OrthoFinder output from all 47 species
GSVIVT01025313001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01026056001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01028516001	PIL5, PIF1	External stimuli response.light.red/far red light.PIF...	0.03	OrthoFinder output from all 47 species
Gb_22201	LRL3	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Gb_30387	UNE10	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Gb_36369	BPEp, ZCW32, BPE, BPEub	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
LOC_Os01g43680.3	LOC_Os01g43680	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
LOC_Os02g39140.1	LOC_Os02g39140	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os06g06900.1	SPT, LOC_Os06g06900	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
LOC_Os06g08500.1	LRL3, LOC_Os06g08500	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os08g01700.1	HEC3, LOC_Os08g01700	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os08g39630.1	LOC_Os08g39630	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
LOC_Os09g25040.1	LRL1, LOC_Os09g25040	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os09g29830.1	LOC_Os09g29830	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
LOC_Os10g40740.1	UNE10, LOC_Os10g40740	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os12g41650.2	PIL5, PIF1,...	transcription factor (bHLH). PIF red/far-red light...	0.05	OrthoFinder output from all 47 species
Lfl_g37660	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Lfl_g39067	SPT	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_10432919g0010	CIB1	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
MA_158850g0010	LRL3	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
MA_88831g0010	No alias	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
MA_9115341g0010	No alias	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Mp3g17350.1	SPT	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Msp_g09011	SPT	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g14891	BPEp, ZCW32, BPE, BPEub	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Msp_g15574	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g35112	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g07688	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g15688	HEC1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g18447	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g43908	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ore_g19998	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g45935	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Pnu_g08374	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g21397	RSL4	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g43879	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011925	HEC2	bHLH-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Solyc02g062690.3.1	BEE2, Solyc02g062690	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Solyc03g097820.2.1	Solyc03g097820	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
Solyc03g115540.2.1	UNE10, Solyc03g115540	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Solyc03g119390.4.1	BEE3, Solyc03g119390	transcription factor (bHLH). transcriptional regulator (CIB)	0.04	OrthoFinder output from all 47 species
Solyc04g007300.4.1	BEE3, Solyc04g007300	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Solyc06g069600.3.1	UNE10, Solyc06g069600	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc06g083170.3.1	Solyc06g083170	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Solyc07g043580.4.1	PIL6, PIF5,...	transcription factor (bHLH). PIF red/far-red light...	0.03	OrthoFinder output from all 47 species
Spa_g03670	RSL2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g06721	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g08006	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g11218	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g23827	HEC1	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g31061	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g13566	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g21602	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g27626	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g31631	No alias	regulatory protein (CIB) of blue light perception &...	0.04	OrthoFinder output from all 47 species
Tin_g38881	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e005046_P003	PIL5, PIF1,...	transcription factor (bHLH). PIF red/far-red light...	0.03	OrthoFinder output from all 47 species
Zm00001e006917_P001	PIL5, PIF1,...	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e018946_P001	Zm00001e018946	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e023698_P001	LRL3, Zm00001e023698	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e035422_P001	RSL4, Zm00001e035422	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	RCA	Interproscan
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006534	cysteine metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	None	Extended
BP	GO:0006546	glycine catabolic process	RCA	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006633	fatty acid biosynthetic process	None	Extended
BP	GO:0006636	unsaturated fatty acid biosynthetic process	RCA	Interproscan
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006733	obsolete oxidoreduction coenzyme metabolic process	RCA	Interproscan
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006766	vitamin metabolic process	RCA	Interproscan
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006779	porphyrin-containing compound biosynthetic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006873	cellular monoatomic ion homeostasis	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007602	phototransduction	None	Extended
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	RCA	Interproscan
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	amino acid catabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009071	serine family amino acid catabolic process	None	Extended
BP	GO:0009072	aromatic amino acid metabolic process	RCA	Interproscan
BP	GO:0009073	aromatic amino acid family biosynthetic process	RCA	Interproscan
BP	GO:0009106	lipoate metabolic process	RCA	Interproscan
BP	GO:0009108	obsolete coenzyme biosynthetic process	RCA	Interproscan
BP	GO:0009117	nucleotide metabolic process	RCA	Interproscan
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009585	red, far-red light phototransduction	IMP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009683	indoleacetic acid metabolic process	None	Extended
BP	GO:0009684	indoleacetic acid biosynthetic process	RCA	Interproscan
BP	GO:0009692	ethylene metabolic process	None	Extended
BP	GO:0009693	ethylene biosynthetic process	IMP	Interproscan
BP	GO:0009694	jasmonic acid metabolic process	None	Extended
BP	GO:0009695	jasmonic acid biosynthetic process	RCA	Interproscan
BP	GO:0009850	auxin metabolic process	None	Extended
BP	GO:0009851	auxin biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010600	regulation of auxin biosynthetic process	IDA	Interproscan
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010928	regulation of auxin mediated signaling pathway	IDA	Interproscan
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015995	chlorophyll biosynthetic process	RCA	Interproscan
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	RCA	Interproscan
BP	GO:0019344	cysteine biosynthetic process	RCA	Interproscan
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0019748	secondary metabolic process	RCA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0019757	glycosinolate metabolic process	None	Extended
BP	GO:0019758	glycosinolate biosynthetic process	None	Extended
BP	GO:0019760	glucosinolate metabolic process	None	Extended
BP	GO:0019761	glucosinolate biosynthetic process	RCA	Interproscan
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0030003	cellular monoatomic cation homeostasis	RCA	Interproscan
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032350	regulation of hormone metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	None	Extended
BP	GO:0033559	unsaturated fatty acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042430	indole-containing compound metabolic process	None	Extended
BP	GO:0042435	indole-containing compound biosynthetic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043449	cellular alkene metabolic process	None	Extended
BP	GO:0043450	alkene biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	RCA	Interproscan
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044550	secondary metabolite biosynthetic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
BP	GO:0046885	regulation of hormone biosynthetic process	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090354	regulation of auxin metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1900673	olefin metabolic process	None	Extended
BP	GO:1900674	olefin biosynthetic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004124	cysteine synthase activity	IEP	HCCA
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0006874	cellular calcium ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009299	mRNA transcription	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009704	de-etiolation	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
MF	GO:0009881	photoreceptor activity	IEP	HCCA
MF	GO:0009882	blue light photoreceptor activity	IEP	HCCA
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010161	red light signaling pathway	IEP	HCCA
BP	GO:0010189	vitamin E biosynthetic process	IEP	HCCA
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	HCCA
MF	GO:0010276	phytol kinase activity	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
BP	GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0010343	singlet oxygen-mediated programmed cell death	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
BP	GO:0010617	circadian regulation of calcium ion oscillation	IEP	HCCA
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0012501	programmed cell death	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	HCCA
CC	GO:0030076	light-harvesting complex	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	HCCA
BP	GO:0036473	cell death in response to oxidative stress	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0042360	vitamin E metabolic process	IEP	HCCA
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
MF	GO:0043425	bHLH transcription factor binding	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051338	regulation of transferase activity	IEP	HCCA
BP	GO:0051480	regulation of cytosolic calcium ion concentration	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0061077	chaperone-mediated protein folding	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
BP	GO:0071071	regulation of phospholipid biosynthetic process	IEP	HCCA
BP	GO:0071483	cellular response to blue light	IEP	HCCA
BP	GO:0071491	cellular response to red light	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	HCCA
MF	GO:0140297	DNA-binding transcription factor binding	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
BP	GO:1902395	regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	HCCA
BP	GO:1903725	regulation of phospholipid metabolic process	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:2000071	regulation of defense response by callose deposition	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	260	306

External Links

No external refs found!

AT3G59060 (PIL6, PIF5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation