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AT3G62890


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G62890

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
AT1G47720 OSB1 Primosome PriB/single-strand DNA-binding 0.03 OrthoFinder output from all 47 species
Adi_g102361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23626 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26997 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g42153 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08600.t1 Aspi01Gene08600 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene10966.t1 Aspi01Gene10966 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene21022.t1 Aspi01Gene21022 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43974.t1 REME1, Aspi01Gene43974 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49181.t1 Aspi01Gene49181 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0028.g024007 No alias not classified & original description: CDS=1-1332 0.05 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.04 OrthoFinder output from all 47 species
Azfi_s0073.g037188 CRR22 not classified & original description: CDS=1-1875 0.04 OrthoFinder output from all 47 species
Azfi_s0127.g048709 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2400 0.05 OrthoFinder output from all 47 species
Azfi_s0408.g068452 No alias not classified & original description: CDS=1-3063 0.03 OrthoFinder output from all 47 species
Cba_g07750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g21995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67712 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67793 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G032600.1 Ceric.09G032600 not classified & original description: pacid=50587514... 0.04 OrthoFinder output from all 47 species
Ceric.13G010900.1 Ceric.13G010900 not classified & original description: pacid=50636623... 0.03 OrthoFinder output from all 47 species
Ceric.15G026300.1 Ceric.15G026300 not classified & original description: pacid=50640552... 0.05 OrthoFinder output from all 47 species
Ceric.16G016300.1 Ceric.16G016300 not classified & original description: pacid=50589149... 0.04 OrthoFinder output from all 47 species
Ceric.17G079000.1 Ceric.17G079000 not classified & original description: pacid=50617699... 0.03 OrthoFinder output from all 47 species
Ceric.19G049000.1 Ceric.19G049000 not classified & original description: pacid=50576332... 0.03 OrthoFinder output from all 47 species
Ceric.1Z005100.1 Ceric.1Z005100 not classified & original description: pacid=50567700... 0.03 OrthoFinder output from all 47 species
Ceric.21G010300.1 Ceric.21G010300 not classified & original description: pacid=50603707... 0.05 OrthoFinder output from all 47 species
Ceric.25G017300.1 Ceric.25G017300 not classified & original description: pacid=50594270... 0.03 OrthoFinder output from all 47 species
Ceric.28G056200.1 Ceric.28G056200 not classified & original description: pacid=50570685... 0.04 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g18379 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35670 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05661 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08229 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17291 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g21328 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37654 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43746 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47080 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.05 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.04 OrthoFinder output from all 47 species
LOC_Os02g07050.1 LOC_Os02g07050 Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35650.1 LOC_Os04g35650 Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
LOC_Os04g41120.1 LOC_Os04g41120 Pentatricopeptide repeat-containing protein At4g38010... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os05g45850.1 LOC_Os05g45850 Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Len_g18246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g07729 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17746 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26486 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g35720 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41118 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05873 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17818 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27632 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29795 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12402 SLO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15871 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001330 No alias not classified & original description: CDS=1-3081 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002051 REME1 not classified & original description: CDS=1-1467 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002236 No alias not classified & original description: CDS=1-2649 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003604 No alias not classified & original description: CDS=1-2277 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005803 No alias not classified & original description: CDS=32-2446 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007440 No alias not classified & original description: CDS=1-1395 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008098 CRR22 not classified & original description: CDS=1-2784 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009076 No alias not classified & original description: CDS=1-1737 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010805 VAC1, ECB2, ATECB2 not classified & original description: CDS=294-2756 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011780 No alias not classified & original description: CDS=1-2490 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013942 No alias not classified & original description: CDS=1-3669 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015411 No alias not classified & original description: CDS=1-3726 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017029 No alias not classified & original description: CDS=1-2337 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019430 No alias not classified & original description: CDS=1-4416 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019669 OTP84 not classified & original description: CDS=1-1971 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0143.g022909 No alias not classified & original description: CDS=1-2484 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023182 No alias not classified & original description: CDS=1-4812 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0155.g023610 No alias not classified & original description: CDS=1-2778 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023714 No alias not classified & original description: CDS=1-2772 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0196.g025493 No alias not classified & original description: CDS=1-2751 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025546 No alias not classified & original description: CDS=1-3414 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0225.g026308 CRR22 ssDNA-binding protein *(OSB) & original description: CDS=95-2287 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0275.g027065 No alias not classified & original description: CDS=1-2244 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s3367.g028731 No alias not classified & original description: CDS=2473-3459 0.02 OrthoFinder output from all 47 species
Sam_g04976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16549 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo171135 OTP84 Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
Smo97289 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g27577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 341 364
IPR002885 Pentatricopeptide_repeat 101 122
IPR002885 Pentatricopeptide_repeat 407 435
IPR002885 Pentatricopeptide_repeat 238 259
IPR002885 Pentatricopeptide_repeat 131 155
IPR032867 DYW_dom 439 563
IPR002885 Pentatricopeptide_repeat 264 312
IPR002885 Pentatricopeptide_repeat 158 209
No external refs found!