AT3G63490

Description : Ribosomal protein L1p/L10e family

Gene families : OG0002232 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002232_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G63490
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00107p00035950	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Adi_g083284	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aev_g11306	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g13358	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Aob_g31675	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g11179	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Azfi_s0065.g035757	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ceric.36G042400.1	Ceric.36G042400	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cre02.g088900	No alias	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Dac_g00779	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g06155	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dde_g12366	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01020727001	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Gb_16169	No alias	component psRPL1 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os05g32220.1	LOC_Os05g32220	component psRPL1 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Lfl_g03897	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Lfl_g19309	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_10002614g0010	No alias	50S ribosomal protein L1, chloroplastic OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Mp1g07500.1	No alias	component psRPL1 of large ribosomal subunit proteome	0.13	OrthoFinder output from all 47 species
Msp_g12689	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g11958	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ore_g28354	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pir_g01275	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c23_11170V3.1	Pp3c23_11170	Ribosomal protein L1p/L10e family	0.05	OrthoFinder output from all 47 species
Ppi_g41124	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023589	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g18339	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Smo143134	No alias	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Spa_g16769	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Tin_g00638	No alias	component *(uL1c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Zm00001e031570_P001	Zm00001e031570	component psRPL1 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006098	pentose-phosphate shunt	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006739	NADP metabolic process	None	Extended
BP	GO:0006740	NADPH regeneration	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009072	aromatic amino acid metabolic process	None	Extended
BP	GO:0009073	aromatic amino acid family biosynthetic process	RCA	Interproscan
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	None	Extended
BP	GO:0009668	plastid membrane organization	None	Extended
BP	GO:0009902	chloroplast relocation	RCA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010027	thylakoid membrane organization	RCA	Interproscan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016226	iron-sulfur cluster assembly	RCA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	RCA	Interproscan
BP	GO:0019362	pyridine nucleotide metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019750	chloroplast localization	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031163	metallo-sulfur cluster assembly	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	RCA	Interproscan
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0042793	plastid transcription	RCA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0045036	protein targeting to chloroplast	RCA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
BP	GO:0046496	nicotinamide nucleotide metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051156	glucose 6-phosphate metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051644	plastid localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
BP	GO:0051667	establishment of plastid localization	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072524	pyridine-containing compound metabolic process	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072596	establishment of protein localization to chloroplast	None	Extended
BP	GO:0072598	protein localization to chloroplast	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
CC	GO:0000312	plastid small ribosomal subunit	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006655	phosphatidylglycerol biosynthetic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
CC	GO:0009528	plastid inner membrane	IEP	HCCA
CC	GO:0009706	chloroplast inner membrane	IEP	HCCA
BP	GO:0010189	vitamin E biosynthetic process	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0010236	plastoquinone biosynthetic process	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0019344	cysteine biosynthetic process	IEP	HCCA
BP	GO:0019757	glycosinolate metabolic process	IEP	HCCA
BP	GO:0019758	glycosinolate biosynthetic process	IEP	HCCA
BP	GO:0019760	glucosinolate metabolic process	IEP	HCCA
BP	GO:0019761	glucosinolate biosynthetic process	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0042360	vitamin E metabolic process	IEP	HCCA
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0048564	photosystem I assembly	IEP	HCCA
MF	GO:0051741	2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028364	Ribosomal_L1/biogenesis	138	328

External Links

No external refs found!

AT3G63490

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation