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  5. AT4G00810

AT4G00810


Description : 60S acidic ribosomal protein family


Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G00810
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00113490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
AMTR_s00100p00050800 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Adi_g041465 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g041466 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g107171 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g09775 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ala_g09776 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g32202 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ala_g38055 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g04075 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g63396 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g10155 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aop_g22529 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aop_g24282 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29611 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g31541 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g46228 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Aop_g71102 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aspi01Gene20688.t1 Aspi01Gene20688 component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0001.g000668 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Azfi_s0068.g036426 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cba_g54064 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g79064 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.01G125200.1 Ceric.01G125200 component *(RPP1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ceric.21G004600.1 Ceric.21G004600 component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000342.4 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre17.g738300 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
Dac_g08982 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dac_g30739 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g11086 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g11087 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Dcu_g23416 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g26924 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g28486 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g19032 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g19763 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g29663 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01019679001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
GSVIVT01027436001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
GSVIVT01038637001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 OrthoFinder output from all 47 species
Gb_21696 No alias component RPP1 of LSU proteome component 0.16 OrthoFinder output from all 47 species
LOC_Os08g02340.1 LOC_Os08g02340 component RPP1 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Len_g00084 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Len_g01989 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Lfl_g08838 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g24779 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g26214 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g26215 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10430200g0010 No alias component RPP1 of LSU proteome component 0.14 OrthoFinder output from all 47 species
MA_90134g0010 No alias component RPP1 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Mp3g02890.1 No alias component RPP1 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Msp_g29772 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Msp_g36176 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g38999 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g27328 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ore_g19945 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Pir_g04407 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g14549 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g33224 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pnu_g32500 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c1_36220V3.1 Pp3c1_36220 60S acidic ribosomal protein family 0.19 OrthoFinder output from all 47 species
Pp3c20_2800V3.1 Pp3c20_2800 60S acidic ribosomal protein family 0.16 OrthoFinder output from all 47 species
Pp3c23_18100V3.1 Pp3c23_18100 60S acidic ribosomal protein family 0.2 OrthoFinder output from all 47 species
Pp3c8_22380V3.1 Pp3c8_22380 60S acidic ribosomal protein family 0.16 OrthoFinder output from all 47 species
Ppi_g07968 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g20363 No alias component *(RPP2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g36444 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g44660 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g45546 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g006001 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g03056 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g05395 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g10738 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g13616 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g20755 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g26274 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g29072 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g31849 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g32024 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g38585 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g41052 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g41870 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g44435 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g44445 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g47755 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g48126 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo133023 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Solyc01g006160.3.1 Solyc01g006160 component RPP1 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Solyc01g016470.3.1 Solyc01g016470 component RPP1 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Solyc01g104370.4.1 Solyc01g104370 component RPP1 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Spa_g03569 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Spa_g07269 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g30536 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g45204 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Tin_g00286 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Tin_g02285 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Tin_g33802 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e021844_P001 Zm00001e021844 component RPP1 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Zm00001e029197_P001 Zm00001e029197 component RPP1 of LSU proteome component 0.24 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006414 translational elongation ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!