AT4G00870

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000245_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G00870

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00242790	MYC6.2, GL3,...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
AMTR_s00025p00048410	BHLH42, TT8,...	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
AT4G09820	BHLH42, TT8	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g018534	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g13949	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g21686	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g31841	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g33982	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g08061	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene11475.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene22992.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene42157.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53959.t1	Aspi01Gene53959	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene59166.t1	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0034.g025419	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: CDS=1-2238	0.04	OrthoFinder output from all 47 species
Azfi_s0114.g046110	No alias	bHLH-type transcription factor & original description: CDS=1-2184	0.03	OrthoFinder output from all 47 species
Cba_g02690	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g59208	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g32437	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g43924	BHLH42, TT8	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01019750001	MYC6.2, GL3	RNA biosynthesis.transcriptional activation.bHLH...	0.05	OrthoFinder output from all 47 species
Gb_32265	BHLH42, TT8	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os01g50940.1	AIB, ATAIB,...	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
LOC_Os04g47040.1	EGL1, EGL3,...	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
LOC_Os07g11020.1	BHLH42, TT8,...	Basic helix-loop-helix protein A OS=Pisum sativum...	0.08	OrthoFinder output from all 47 species
LOC_Os10g42430.1	ATMYC2, MYC2,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
MA_17689g0010	MYC6.2, GL3	transcription factor (bHLH). bHLH-IVa-class iron...	0.03	OrthoFinder output from all 47 species
MA_7127479g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_8255g0010	BHLH42, TT8	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
MA_96585g0010	BHLH42, TT8	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Msp_g14087	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g42228	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g02577	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g02335	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g13609	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000372	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: CDS=1-1683	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007871	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: CDS=1-2427	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010825	No alias	bHLH-type transcription factor & original description: CDS=1-2244	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018967	ATMYC2, MYC2,...	bHLH-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0227.g026359	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: CDS=1-2571	0.03	OrthoFinder output from all 47 species
Smo158887	No alias	Transcription factor bHLH13 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Smo445428	No alias	No description available	0.03	OrthoFinder output from all 47 species
Solyc01g096370.4.1	Solyc01g096370	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Solyc05g050560.1.1	Solyc05g050560	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc08g008600.3.1	Solyc08g008600	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc08g083170.1.1	Solyc08g083170	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc09g065100.3.1	BHLH42, TT8,...	transcription factor (bHLH)	0.08	OrthoFinder output from all 47 species
Solyc10g009290.1.1	Solyc10g009290	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g07612	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g28428	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e002421_P001	ATMYC2, MYC2,...	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e033106_P004	BHLH42, TT8,...	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
BP	GO:0006308	DNA catabolic process	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0009900	dehiscence	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0010047	fruit dehiscence	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010160	formation of animal organ boundary	IEP	HCCA
CC	GO:0010169	thioglucosidase complex	IEP	HCCA
MF	GO:0010180	thioglucosidase binding	IEP	HCCA
BP	GO:0010358	leaf shaping	IEP	HCCA
BP	GO:0010430	fatty acid omega-oxidation	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0040034	regulation of development, heterochronic	IEP	HCCA
MF	GO:0046593	mandelonitrile lyase activity	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048446	petal morphogenesis	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	HCCA
BP	GO:0048509	regulation of meristem development	IEP	HCCA
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0080051	cutin transport	IEP	HCCA
BP	GO:0080172	petal epidermis patterning	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	249	295
IPR025610	MYC/MYB_N	35	189

External Links

No external refs found!

AT4G00870

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation