AT4G02840

Description : Small nuclear ribonucleoprotein family protein

Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G02840

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00127560	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
AT3G07590	No alias	Small nuclear ribonucleoprotein family protein	0.05	OrthoFinder output from all 47 species
Als_g04085	No alias	component *(Sm-D1) of U1/U2/U4/U5-associated Sm...	0.02	OrthoFinder output from all 47 species
Ceric.11G065500.1	Ceric.11G065500	component *(Sm-D1) of U1/U2/U4/U5-associated Sm...	0.06	OrthoFinder output from all 47 species
Ceric.38G033800.1	Ceric.38G033800	component *(Sm-D1) of U1/U2/U4/U5-associated Sm...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000754.23	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.01	OrthoFinder output from all 47 species
Cre16.g665400	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.01	OrthoFinder output from all 47 species
Mp1g03900.1	No alias	component Sm-D1 of U1/U2/U4/U5-associated Sm accessory...	0.05	OrthoFinder output from all 47 species
Msp_g40348	No alias	component *(Sm-D1) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	ISS	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001163	LSM_dom_euk/arc	5	69

External Links

No external refs found!

AT4G02840

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation