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AT4G03290


Description : EF hand calcium-binding protein family


Gene families : OG0000205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G03290
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AT2G43290 MSS3 Calcium-binding EF-hand family protein 0.06 OrthoFinder output from all 47 species
AT4G12860 UNE14 EF hand calcium-binding protein family 0.05 OrthoFinder output from all 47 species
Aev_g12844 CML42 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10823 CML43 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33734 UNE14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g43266 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12298 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06369.t1 Aspi01Gene06369 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34646.t1 CML42, Aspi01Gene34646 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34969.t1 UNE14, Aspi01Gene34969 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene57526.t1 CML43, Aspi01Gene57526 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09588 CML42 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12957 UNE14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g37155 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g39380.1 AGD11, LOC_Os02g39380 Probable calcium-binding protein CML17 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
LOC_Os08g04890.1 CML42, LOC_Os08g04890 Probable calcium-binding protein CML32 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
LOC_Os12g12730.1 AGD11, LOC_Os12g12730 Probable calcium-binding protein CML28 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_103558g0010 UNE14 Calcium-binding protein CML42 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_8749g0010 CML43 Calcium-binding protein CML42 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Mp6g10070.1 UNE14 Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Mp6g18000.1 UNE14 Calmodulin-like protein 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g29580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42557 AGD11 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28960 AGD11 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16755 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g058160.2.1 Solyc04g058160 Probable calcium-binding protein CML44 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc05g050750.1.1 AGD11, Solyc05g050750 Calmodulin-like protein 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc06g150132.1.1 AGD11, Solyc06g150132 Calmodulin-like protein 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc09g055880.1.1 AGD11, Solyc09g055880 Calmodulin-like protein 3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc11g044920.1.1 AGD11, Solyc11g044920 Calmodulin-like protein 7 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g11411 AGD11 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33279 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49929 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035870_P001 CML42, Zm00001e035870 Probable calcium-binding protein CML32 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
Zm00001e038252_P001 CML43, Zm00001e038252 Probable calcium-binding protein CML27 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e039793_P001 AGD11, Zm00001e039793 Probable calcium-binding protein CML28 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0009409 response to cold IEP Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0002238 response to molecule of fungal origin IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0005451 obsolete monoatomic cation:proton antiporter activity IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005881 cytoplasmic microtubule IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
CC GO:0010005 cortical microtubule, transverse to long axis IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
BP GO:0010959 regulation of metal ion transport IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
CC GO:0016324 apical plasma membrane IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0030427 site of polarized growth IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0035250 UDP-galactosyltransferase activity IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
CC GO:0035838 growing cell tip IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042330 taxis IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0043266 regulation of potassium ion transport IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046509 1,2-diacylglycerol 3-beta-galactosyltransferase activity IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
BP GO:0051017 actin filament bundle assembly IEP HCCA
MF GO:0051139 metal cation:proton antiporter activity IEP HCCA
CC GO:0051286 cell tip IEP HCCA
CC GO:0055028 cortical microtubule IEP HCCA
CC GO:0060187 cell pole IEP HCCA
BP GO:0061572 actin filament bundle organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
CC GO:0090404 pollen tube tip IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0098590 plasma membrane region IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140828 metal cation:monoatomic cation antiporter activity IEP HCCA
BP GO:1901016 regulation of potassium ion transmembrane transporter activity IEP HCCA
BP GO:1901379 regulation of potassium ion transmembrane transport IEP HCCA
BP GO:1901979 regulation of inward rectifier potassium channel activity IEP HCCA
BP GO:2001257 regulation of cation channel activity IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 79 145
IPR002048 EF_hand_dom 5 67
No external refs found!