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  5. AT4G04480

AT4G04480


Description : unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0001367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001367_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G04480
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00037390 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00044p00128270 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00044p00128640 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00045p00207230 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00055p00185500 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00067p00091510 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Ala_g03889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35971 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20113 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34497.t1 Aspi01Gene34497 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene34559.t1 Aspi01Gene34559 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene34562.t1 Aspi01Gene34562 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34564.t1 Aspi01Gene34564 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34568.t1 Aspi01Gene34568 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0182.g056421 No alias not classified & original description: CDS=1-1590 0.03 OrthoFinder output from all 47 species
Azfi_s0182.g056424 No alias not classified & original description: CDS=1-1896 0.05 OrthoFinder output from all 47 species
Azfi_s0334.g065497 No alias not classified & original description: CDS=1-1488 0.07 OrthoFinder output from all 47 species
Ceric.17G060100.1 Ceric.17G060100 not classified & original description: pacid=50617754... 0.04 OrthoFinder output from all 47 species
Ceric.1Z099600.1 Ceric.1Z099600 not classified & original description: pacid=50573463... 0.03 OrthoFinder output from all 47 species
Ceric.1Z099800.1 Ceric.1Z099800 not classified & original description: pacid=50573466... 0.03 OrthoFinder output from all 47 species
Ceric.33G013700.1 Ceric.33G013700 not classified & original description: pacid=50607125... 0.03 OrthoFinder output from all 47 species
Dac_g26357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20132 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g30200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g51610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17786 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17788 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01012688001 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01012691001 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_15744 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_15745 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_15746 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g13190.1 LOC_Os02g13190 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g13220.1 LOC_Os02g13220 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g28590.1 LOC_Os02g28590 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp5g00910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp5g01100.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp5g17910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Msp_g38437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g24381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g080840.1.1 Solyc02g080840 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc02g080850.1.1 Solyc02g080850 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e014444_P001 Zm00001e014444 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010037 response to carbon dioxide IEP HCCA
BP GO:0016143 S-glycoside metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
BP GO:0036294 cellular response to decreased oxygen levels IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042343 indole glucosinolate metabolic process IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
BP GO:0071453 cellular response to oxygen levels IEP HCCA
BP GO:0071456 cellular response to hypoxia IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR027949 Chloroplast_duf 72 377
No external refs found!