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  5. AT4G05170

AT4G05170


Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein


Gene families : OG0000725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G05170
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00092220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AMTR_s00109p00114170 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AT1G27660 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.09 OrthoFinder output from all 47 species
AT1G31050 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G20640 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g058096 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30685 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24386 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31842 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14362 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21207 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05285 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09878 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36288 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0247.g060091 No alias bHLH-type transcription factor & original description: CDS=1-450 0.03 OrthoFinder output from all 47 species
Ceric.22G033600.1 Ceric.22G033600 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.32G003100.1 Ceric.32G003100 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g08512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02751 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23407 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18517 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29621 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016594001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01018886001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01038142001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.07 OrthoFinder output from all 47 species
Gb_06063 No alias transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Gb_21995 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Gb_33415 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_40387 No alias transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species
LOC_Os03g55220.1 LOC_Os03g55220 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os04g47810.1 LOC_Os04g47810 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os05g14010.1 LOC_Os05g14010 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os05g42180.1 LOC_Os05g42180 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Len_g22949 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36610 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g46884 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g19970.1 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Nbi_g04901 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g26048 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38619 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18964 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32377 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g39483 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g39581 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g51301 No alias bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g13014 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013074 No alias bHLH-type transcription factor & original description: CDS=1-876 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0184.g024982 No alias bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g18175 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo117274 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Solyc02g084880.3.1 Solyc02g084880 transcription factor (bHLH) 0.09 OrthoFinder output from all 47 species
Solyc03g031450.3.1 Solyc03g031450 transcription factor (bHLH) 0.1 OrthoFinder output from all 47 species
Solyc03g120530.3.1 Solyc03g120530 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc04g080710.4.1 Solyc04g080710 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Spa_g15320 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005748_P002 Zm00001e005748 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e007719_P001 Zm00001e007719 transcription factor (bHLH) 0.01 OrthoFinder output from all 47 species
Zm00001e010350_P001 Zm00001e010350 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e016395_P001 Zm00001e016395 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Zm00001e027157_P001 Zm00001e027157 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e032055_P001 Zm00001e032055 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e034854_P002 Zm00001e034854 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0007043 cell-cell junction assembly IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009806 lignan metabolic process IEP HCCA
BP GO:0009807 lignan biosynthetic process IEP HCCA
BP GO:0009809 lignin biosynthetic process IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010345 suberin biosynthetic process IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034329 cell junction assembly IEP HCCA
BP GO:0034330 cell junction organization IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0045216 cell-cell junction organization IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:0048226 Casparian strip IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048766 root hair initiation IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA

No InterPro domains available for this sequence

No external refs found!