AT4G05470

Description : RNI-like superfamily protein

Gene families : OG0000527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G05470
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
AT4G08980	FBW2	F-BOX WITH WD-40 2	0.06	OrthoFinder output from all 47 species
Adi_g094464	FBW2	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Aev_g03067	FBW2	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Cba_g01790	SKIP1	substrate adaptor of SCF E3 ubiquitin ligase complex &...	0.02	OrthoFinder output from all 47 species
Ehy_g03539	FBW2	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Ppi_g08863	FBW2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g52547	No alias	substrate adaptor *(SKIP18) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	47	93

External Links

No external refs found!

AT4G05470

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation