AT4G07400 (VFB3)

Aliases : VFB3

Description : VIER F-box proteine 3

Gene families : OG0001029 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001029_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G07400

Target	Alias	Description	ECC score	Gene Family Method
Adi_g089174	No alias	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.01	OrthoFinder output from all 47 species
Aev_g18503	VFB3	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Als_g07333	VFB4, SKIP2	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Azfi_s0312.g064187	VFB3	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Dac_g09521	VFB4, SKIP2	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Dcu_g05676	VFB4, SKIP2	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ehy_g30738	VFB4, SKIP2	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Nbi_g05363	VFB4, SKIP2	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Ppi_g53377	VFB4, SKIP2	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Sam_g25908	No alias	substrate adaptor *(VFB) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Tin_g09463	VFB4, SKIP2	substrate adaptor *(VFB) of SCF E3 ubiquiTin ligase...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	423	441
IPR001611	Leu-rich_rpt	163	183
IPR001810	F-box_dom	74	107

External Links

No external refs found!

AT4G07400 (VFB3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation