AT4G08920 (HY4, ATCRY1, BLU1, OOP2, CRY1)


Aliases : HY4, ATCRY1, BLU1, OOP2, CRY1

Description : cryptochrome 1


Gene families : OG0000814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G08920
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00182380 HY4, ATCRY1,... External stimuli response.light.UV-A/blue... 0.04 OrthoFinder output from all 47 species
AMTR_s00148p00098440 ATCRY2, CRY2,... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AMTR_s02137p00007130 HY4, ATCRY1,... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
Ala_g05464 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21204 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50535 HY4, ATCRY1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04905 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11870 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14272.t1 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01276 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G056000.1 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021579.19 ATCRY2, CRY2,... Cryptochrome-1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g09706 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20214 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g08629 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08682 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009033001 HY4, ATCRY1,... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
LOC_Os02g36380.1 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.03 OrthoFinder output from all 47 species
LOC_Os04g37920.1 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.04 OrthoFinder output from all 47 species
Lfl_g03284 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0295.g027185 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original... 0.03 OrthoFinder output from all 47 species
Smo230376 HY4, ATCRY1,... External stimuli response.light.UV-A/blue... 0.04 OrthoFinder output from all 47 species
Smo92414 ATCRY2, CRY2,... External stimuli response.light.UV-A/blue... 0.05 OrthoFinder output from all 47 species
Solyc04g074180.4.1 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.02 OrthoFinder output from all 47 species
Solyc09g090100.3.1 ATCRY2, CRY2,... cryptochrome photoreceptor (CRY) 0.04 OrthoFinder output from all 47 species
Tin_g08536 HY4, ATCRY1,... cryptochrome photoreceptor *(CRY) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e014894_P002 HY4, ATCRY1,... cryptochrome photoreceptor (CRY) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IDA Interproscan
MF GO:0005515 protein binding IPI Interproscan
MF GO:0005524 ATP binding IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0007623 circadian rhythm NAS Interproscan
BP GO:0009414 response to water deprivation IGI Interproscan
BP GO:0009583 detection of light stimulus IMP Interproscan
BP GO:0009637 response to blue light IMP Interproscan
BP GO:0009637 response to blue light RCA Interproscan
BP GO:0009637 response to blue light NAS Interproscan
BP GO:0009640 photomorphogenesis IMP Interproscan
BP GO:0009785 blue light signaling pathway TAS Interproscan
MF GO:0009882 blue light photoreceptor activity IMP Interproscan
BP GO:0010075 regulation of meristem growth IGI Interproscan
BP GO:0010118 stomatal movement IGI Interproscan
BP GO:0010155 regulation of proton transport RCA Interproscan
BP GO:0010343 singlet oxygen-mediated programmed cell death IMP Interproscan
BP GO:0010617 circadian regulation of calcium ion oscillation IMP Interproscan
MF GO:0042803 protein homodimerization activity IPI Interproscan
BP GO:0046283 anthocyanin-containing compound metabolic process IMP Interproscan
BP GO:0046777 protein autophosphorylation IDA Interproscan
BP GO:0046777 protein autophosphorylation RCA Interproscan
BP GO:0051510 regulation of unidimensional cell growth IMP Interproscan
BP GO:0055114 obsolete oxidation-reduction process IMP Interproscan
Type GO Term Name Evidence Source
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006000 fructose metabolic process IEP HCCA
BP GO:0006002 fructose 6-phosphate metabolic process IEP HCCA
BP GO:0006003 fructose 2,6-bisphosphate metabolic process IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006636 unsaturated fatty acid biosynthetic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009106 lipoate metabolic process IEP HCCA
BP GO:0009108 obsolete coenzyme biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009638 phototropism IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
CC GO:0009898 cytoplasmic side of plasma membrane IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
BP GO:0009903 chloroplast avoidance movement IEP HCCA
BP GO:0009904 chloroplast accumulation movement IEP HCCA
CC GO:0009986 cell surface IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010119 regulation of stomatal movement IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP HCCA
BP GO:0010359 regulation of anion channel activity IEP HCCA
BP GO:0010360 negative regulation of anion channel activity IEP HCCA
BP GO:0010361 regulation of anion channel activity by blue light IEP HCCA
BP GO:0010362 negative regulation of anion channel activity by blue light IEP HCCA
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010600 regulation of auxin biosynthetic process IEP HCCA
BP GO:0010928 regulation of auxin mediated signaling pathway IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
BP GO:0019757 glycosinolate metabolic process IEP HCCA
BP GO:0019758 glycosinolate biosynthetic process IEP HCCA
BP GO:0019760 glucosinolate metabolic process IEP HCCA
BP GO:0019761 glucosinolate biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031897 Tic complex IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032104 regulation of response to extracellular stimulus IEP HCCA
BP GO:0032107 regulation of response to nutrient levels IEP HCCA
BP GO:0032350 regulation of hormone metabolic process IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032410 negative regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0032413 negative regulation of ion transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033559 unsaturated fatty acid metabolic process IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034763 negative regulation of transmembrane transport IEP HCCA
BP GO:0034766 negative regulation of monoatomic ion transmembrane transport IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043271 negative regulation of monoatomic ion transport IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043609 regulation of carbon utilization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044070 regulation of monoatomic anion transport IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045037 protein import into chloroplast stroma IEP HCCA
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0046885 regulation of hormone biosynthetic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0050308 sugar-phosphatase activity IEP HCCA
BP GO:0051051 negative regulation of transport IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051341 regulation of oxidoreductase activity IEP HCCA
BP GO:0051353 positive regulation of oxidoreductase activity IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
BP GO:0090342 obsolete regulation of cell aging IEP HCCA
BP GO:0090354 regulation of auxin metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0098552 side of membrane IEP HCCA
CC GO:0098562 cytoplasmic side of membrane IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1902551 regulation of catalase activity IEP HCCA
BP GO:1902553 positive regulation of catalase activity IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903792 negative regulation of monoatomic anion transport IEP HCCA
BP GO:1903959 regulation of monoatomic anion transmembrane transport IEP HCCA
BP GO:1903960 negative regulation of anion transmembrane transport IEP HCCA
BP GO:2000071 regulation of defense response by callose deposition IEP HCCA
BP GO:2000468 regulation of peroxidase activity IEP HCCA
BP GO:2000470 positive regulation of peroxidase activity IEP HCCA
InterPro domains Description Start Stop
IPR020978 Cryptochrome_C 519 629
IPR005101 Cryptochr/Photolyase_FAD-bd 290 488
IPR006050 DNA_photolyase_N 14 170
No external refs found!