AT4G12420 (SKU5)

Aliases : SKU5

Description : Cupredoxin superfamily protein

Gene families : OG0000411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G12420

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00037p00216460	sks5,...	Enzyme classification.EC_1 oxidoreductases.EC_1.10...	0.03	OrthoFinder output from all 47 species
AMTR_s00159p00040990	sks11,...	Enzyme classification.EC_1 oxidoreductases.EC_1.10...	0.04	OrthoFinder output from all 47 species
AT3G13400	sks13	SKU5 similar 13	0.05	OrthoFinder output from all 47 species
Adi_g010803	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Aev_g19338	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Aev_g29914	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Ala_g04234	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.09	OrthoFinder output from all 47 species
Ala_g22814	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Ala_g30234	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Als_g07335	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Als_g09372	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Als_g32346	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Als_g48778	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Aob_g23629	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Aop_g08919	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Aop_g25152	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Cba_g07557	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Cba_g13636	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Cba_g34332	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Cba_g56528	sks8	EC_1.10 oxidoreductase acting on diphenol or related...	0.07	OrthoFinder output from all 47 species
Cba_g59321	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Ceric.02G005000.1	sks5, Ceric.02G005000	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Ceric.02G005300.1	sks5, Ceric.02G005300	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Ceric.02G106600.1	SKU5, Ceric.02G106600	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Ceric.03G066500.1	SKU5, Ceric.03G066500	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Ceric.1Z016700.1	sks4, Ceric.1Z016700	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Dac_g03791	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.1	OrthoFinder output from all 47 species
Dac_g21577	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Dac_g31878	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.05	OrthoFinder output from all 47 species
Dcu_g04889	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Dcu_g10705	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Dcu_g13483	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Ehy_g06856	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.09	OrthoFinder output from all 47 species
Ehy_g12921	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Ehy_g30073	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.07	OrthoFinder output from all 47 species
GSVIVT01001270001	SKU5	Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana	0.11	OrthoFinder output from all 47 species
GSVIVT01018624001	SKU5	Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01023902001	sks5	L-ascorbate oxidase homolog OS=Brassica napus	0.04	OrthoFinder output from all 47 species
GSVIVT01030441001	sks5	L-ascorbate oxidase homolog OS=Brassica napus	0.04	OrthoFinder output from all 47 species
Gb_09725	SKU5	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Gb_17061	sks5	L-ascorbate oxidase homolog OS=Brassica napus...	0.04	OrthoFinder output from all 47 species
Gb_29247	sks4	L-ascorbate oxidase homolog OS=Brassica napus...	0.03	OrthoFinder output from all 47 species
LOC_Os01g01030.1	sks3, LOC_Os01g01030	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g60080.1	sks11, LOC_Os01g60080	L-ascorbate oxidase homolog OS=Brassica napus...	0.03	OrthoFinder output from all 47 species
LOC_Os07g02810.1	sks17, LOC_Os07g02810	L-ascorbate oxidase homolog OS=Nicotiana tabacum...	0.02	OrthoFinder output from all 47 species
LOC_Os10g36390.1	SKU5, LOC_Os10g36390	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Len_g00683	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Len_g41387	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Len_g45890	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Lfl_g18213	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Lfl_g25260	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
MA_110832g0010	SKU5	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.1	OrthoFinder output from all 47 species
MA_161013g0010	sks5	L-ascorbate oxidase homolog OS=Nicotiana tabacum...	0.05	OrthoFinder output from all 47 species
Msp_g05618	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Msp_g14876	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.07	OrthoFinder output from all 47 species
Nbi_g05449	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Nbi_g06759	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Ore_g08138	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.05	OrthoFinder output from all 47 species
Ore_g27442	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Ppi_g33219	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Ppi_g56836	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Ppi_g63350	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014773	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017908	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Sam_g09055	No alias	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Sam_g15513	No alias	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Sam_g17164	No alias	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Sam_g17165	No alias	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Sam_g35195	No alias	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Sam_g49227	No alias	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Smo229918	sks4	L-ascorbate oxidase homolog OS=Brassica napus	0.02	OrthoFinder output from all 47 species
Smo410532	sks4	Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc02g065170.3.1	sks17, Solyc02g065170	L-ascorbate oxidase homolog OS=Nicotiana tabacum...	0.08	OrthoFinder output from all 47 species
Solyc02g080670.3.1	sks4, Solyc02g080670	L-ascorbate oxidase homolog OS=Brassica napus...	0.04	OrthoFinder output from all 47 species
Solyc03g063150.3.1	sks12, Solyc03g063150	L-ascorbate oxidase homolog OS=Nicotiana tabacum...	0.03	OrthoFinder output from all 47 species
Solyc04g082140.3.1	sks5, Solyc04g082140	L-ascorbate oxidase homolog OS=Brassica napus...	0.07	OrthoFinder output from all 47 species
Solyc07g052230.3.1	sks5, Solyc07g052230	L-ascorbate oxidase homolog OS=Nicotiana tabacum...	0.03	OrthoFinder output from all 47 species
Solyc08g079090.4.1	SKU5, Solyc08g079090	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Solyc09g055930.3.1	sks3, Solyc09g055930	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Spa_g25437	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Tin_g10569	sks5	EC_1.10 oxidoreductase acTing on diphenol or related...	0.03	OrthoFinder output from all 47 species
Tin_g11435	sks4	EC_1.10 oxidoreductase acTing on diphenol or related...	0.03	OrthoFinder output from all 47 species
Zm00001e001690_P001	sks3, Zm00001e001690	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e004398_P001	SKU5, Zm00001e004398	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e012961_P001	sks4, Zm00001e012961	L-ascorbate oxidase homolog OS=Nicotiana tabacum...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	RCA	Interproscan
BP	GO:0000902	cell morphogenesis	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009825	multidimensional cell growth	RCA	Interproscan
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009932	cell tip growth	IMP	Interproscan
BP	GO:0009932	cell tip growth	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010817	regulation of hormone levels	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	RCA	Interproscan
BP	GO:0021700	developmental maturation	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030243	cellulose metabolic process	RCA	Interproscan
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031225	obsolete anchored component of membrane	TAS	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043473	pigmentation	None	Extended
BP	GO:0043476	pigment accumulation	None	Extended
BP	GO:0043478	pigment accumulation in response to UV light	None	Extended
BP	GO:0043479	pigment accumulation in tissues in response to UV light	None	Extended
BP	GO:0043480	pigment accumulation in tissues	None	Extended
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	RCA	Interproscan
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
CC	GO:0046658	obsolete anchored component of plasma membrane	IDA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004560	alpha-L-fucosidase activity	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
BP	GO:0006084	acetyl-CoA metabolic process	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
MF	GO:0015928	fucosidase activity	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030036	actin cytoskeleton organization	IEP	HCCA
BP	GO:0030832	regulation of actin filament length	IEP	HCCA
BP	GO:0030833	regulation of actin filament polymerization	IEP	HCCA
BP	GO:0030834	regulation of actin filament depolymerization	IEP	HCCA
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	HCCA
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	HCCA
BP	GO:0031333	negative regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0032271	regulation of protein polymerization	IEP	HCCA
BP	GO:0032272	negative regulation of protein polymerization	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	HCCA
BP	GO:0032970	regulation of actin filament-based process	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034406	cell wall beta-glucan metabolic process	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
CC	GO:0045298	tubulin complex	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
MF	GO:0047513	1,2-alpha-L-fucosidase activity	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0051015	actin filament binding	IEP	HCCA
BP	GO:0051016	barbed-end actin filament capping	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051693	actin filament capping	IEP	HCCA
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0071258	cellular response to gravity	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0110053	regulation of actin filament organization	IEP	HCCA
BP	GO:1901879	regulation of protein depolymerization	IEP	HCCA
BP	GO:1901880	negative regulation of protein depolymerization	IEP	HCCA
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	HCCA
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001117	Cu-oxidase_2nd	157	310
IPR011706	Cu-oxidase_C	422	531
IPR011707	Cu-oxidase_N	31	144

External Links

No external refs found!

AT4G12420 (SKU5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation