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  5. AT4G13100

AT4G13100


Description : RING/U-box superfamily protein


Gene families : OG0002164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G13100
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Adi_g009504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023443 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene21802.t1 Aspi01Gene21802 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G027400.1 Ceric.03G027400 not classified & original description: pacid=50573175... 0.04 OrthoFinder output from all 47 species
Ceric.30G013200.1 Ceric.30G013200 not classified & original description: pacid=50609199... 0.03 OrthoFinder output from all 47 species
Dac_g09072 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01030507001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os08g41520.1 LOC_Os08g41520 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g04883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27065 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27845 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13747 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30522 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g081180.2.1 Solyc02g081180 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g40433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
CC GO:0009503 thylakoid light-harvesting complex IEP HCCA
CC GO:0009517 PSII associated light-harvesting complex II IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010117 photoprotection IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016122 xanthophyll metabolic process IEP HCCA
CC GO:0030076 light-harvesting complex IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0032928 regulation of superoxide anion generation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0090322 regulation of superoxide metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098807 chloroplast thylakoid membrane protein complex IEP HCCA
BP GO:0120254 olefinic compound metabolic process IEP HCCA
BP GO:0120255 olefinic compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!