Description : RNA-binding (RRM/RBD/RNP motifs) family protein
Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT4G13860 | |
| Cluster | HCCA: Cluster_84 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g121412 | GR-RBP4, GRP4 | RNA editing factor *(ORRM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g12109 | CCR2, ATGRP7,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g12386 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g26233 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g20446 | GR-RBP4, GRP4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g109660.2.1 | CCR2, ATGRP7,... | RNA chaperone (RZ1|GR-RBP) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g22379 | GRP2, ATGRP2, GR-RBP2 | RNA editing factor *(ORRM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g57119 | GRP2, ATGRP2, GR-RBP2 | RNA editing factor *(ORRM3) & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISS | Interproscan |
| CC | GO:0005575 | cellular_component | ND | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000041 | transition metal ion transport | IEP | HCCA |
| MF | GO:0000249 | C-22 sterol desaturase activity | IEP | HCCA |
| MF | GO:0004620 | phospholipase activity | IEP | HCCA |
| CC | GO:0005576 | extracellular region | IEP | HCCA |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | HCCA |
| BP | GO:0006721 | terpenoid metabolic process | IEP | HCCA |
| BP | GO:0006722 | triterpenoid metabolic process | IEP | HCCA |
| BP | GO:0006869 | lipid transport | IEP | HCCA |
| MF | GO:0008289 | lipid binding | IEP | HCCA |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | HCCA |
| BP | GO:0010053 | root epidermal cell differentiation | IEP | HCCA |
| BP | GO:0010101 | post-embryonic root morphogenesis | IEP | HCCA |
| BP | GO:0010102 | lateral root morphogenesis | IEP | HCCA |
| BP | GO:0010263 | tricyclic triterpenoid biosynthetic process | IEP | HCCA |
| BP | GO:0010683 | tricyclic triterpenoid metabolic process | IEP | HCCA |
| BP | GO:0016104 | triterpenoid biosynthetic process | IEP | HCCA |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | HCCA |
| MF | GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| BP | GO:0019742 | pentacyclic triterpenoid metabolic process | IEP | HCCA |
| BP | GO:0019745 | pentacyclic triterpenoid biosynthetic process | IEP | HCCA |
| MF | GO:0019825 | oxygen binding | IEP | HCCA |
| BP | GO:0021700 | developmental maturation | IEP | HCCA |
| MF | GO:0031559 | oxidosqualene cyclase activity | IEP | HCCA |
| MF | GO:0034074 | marneral synthase activity | IEP | HCCA |
| MF | GO:0034075 | arabidiol synthase activity | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0040007 | growth | IEP | HCCA |
| MF | GO:0045735 | nutrient reservoir activity | IEP | HCCA |
| BP | GO:0048364 | root development | IEP | HCCA |
| BP | GO:0048469 | cell maturation | IEP | HCCA |
| BP | GO:0048527 | lateral root development | IEP | HCCA |
| BP | GO:0048528 | post-embryonic root development | IEP | HCCA |
| BP | GO:0048589 | developmental growth | IEP | HCCA |
| BP | GO:0048764 | trichoblast maturation | IEP | HCCA |
| BP | GO:0048765 | root hair cell differentiation | IEP | HCCA |
| BP | GO:0048767 | root hair elongation | IEP | HCCA |
| MF | GO:0070704 | sterol desaturase activity | IEP | HCCA |
| BP | GO:0071695 | anatomical structure maturation | IEP | HCCA |
| BP | GO:0090627 | plant epidermal cell differentiation | IEP | HCCA |
| BP | GO:0090696 | post-embryonic plant organ development | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 5 | 74 |
| No external refs found! |
