AT4G16144 (AMSH3)

Aliases : AMSH3

Description : associated molecule with the SH3 domain of STAM 3

Gene families : OG0001591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001591_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G16144

Target	Alias	Description	ECC score	Gene Family Method
Adi_g109118	AMSH3	deubiquitinase *(AMSH) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g23492	AMSH1	deubiquitinase *(AMSH) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g17081	AMSH1	deubiquitinase *(AMSH) & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c6_16700V3.1	AMSH1, Pp3c6_16700	associated molecule with the SH3 domain of STAM 1	0.02	OrthoFinder output from all 47 species
Ppi_g05194	AMSH1	deubiquitinase *(AMSH) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006897	endocytosis	IMP	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007033	vacuole organization	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016579	protein deubiquitination	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032386	regulation of intracellular transport	None	Extended
BP	GO:0032388	positive regulation of intracellular transport	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033157	regulation of intracellular protein transport	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044088	regulation of vacuole organization	None	Extended
BP	GO:0044090	positive regulation of vacuole organization	IMP	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046907	intracellular transport	IMP	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051050	positive regulation of transport	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051222	positive regulation of protein transport	None	Extended
BP	GO:0051223	regulation of protein transport	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070201	regulation of establishment of protein localization	None	Extended
BP	GO:0070536	protein K63-linked deubiquitination	IDA	Interproscan
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071108	protein K48-linked deubiquitination	IDA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090316	positive regulation of intracellular protein transport	IMP	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903829	positive regulation of protein localization	None	Extended
BP	GO:1904951	positive regulation of establishment of protein localization	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006089	lactate metabolic process	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009438	methylglyoxal metabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042182	ketone catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046185	aldehyde catabolic process	IEP	HCCA
BP	GO:0051596	methylglyoxal catabolic process	IEP	HCCA
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015063	USP8_dimer	4	94
IPR000555	JAMM/MPN+_dom	329	436

External Links

No external refs found!

AT4G16144 (AMSH3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation