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  5. AT4G16470

AT4G16470


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G16470

Target Alias Description ECC score Gene Family Method Actions
AT1G31010 OSB4 organellar single-stranded DNA binding protein 4 0.02 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g002797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g114947 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24726 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35613 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g36010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06880 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27232 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27280 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29475 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37587 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28421 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53169.t1 Aspi01Gene53169 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05792 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20531 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29689 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g66293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G012900.1 CRR22, Ceric.10G012900 not classified & original description: pacid=50612392... 0.03 OrthoFinder output from all 47 species
Ceric.11G009800.1 Ceric.11G009800 not classified & original description: pacid=50594985... 0.04 OrthoFinder output from all 47 species
Ceric.13G057700.1 Ceric.13G057700 not classified & original description: pacid=50635307... 0.03 OrthoFinder output from all 47 species
Ceric.16G047600.1 Ceric.16G047600 not classified & original description: pacid=50589369... 0.03 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.04 OrthoFinder output from all 47 species
Ceric.18G049100.1 Ceric.18G049100 not classified & original description: pacid=50621467... 0.05 OrthoFinder output from all 47 species
Ceric.18G077100.1 Ceric.18G077100 not classified & original description: pacid=50621411... 0.04 OrthoFinder output from all 47 species
Ceric.23G032000.1 Ceric.23G032000 not classified & original description: pacid=50611416... 0.04 OrthoFinder output from all 47 species
Ceric.25G017200.1 VAC1, ECB2,... not classified & original description: pacid=50594284... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.01 OrthoFinder output from all 47 species
Dac_g21016 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30435 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06971 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12070 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21341 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g26576 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26802 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g40775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g44643 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012206001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01017763001 No alias Pentatricopeptide repeat-containing protein At4g15720... 0.05 OrthoFinder output from all 47 species
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Gb_11981 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
Gb_32256 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Gb_33311 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
LOC_Os03g63260.3 LOC_Os03g63260 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Len_g03784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17127 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33758 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21424 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28787 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g32206 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g36039 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08399 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g23628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23751 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g33533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02108 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g21254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo34785 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc03g096610.2.1 Solyc03g096610 Pentatricopeptide repeat-containing protein At1g33350... 0.03 OrthoFinder output from all 47 species
Solyc03g115790.1.1 CRR28, Solyc03g115790 Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Solyc06g062610.2.1 Solyc06g062610 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc10g080220.2.1 Solyc10g080220 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc12g099620.1.1 Solyc12g099620 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
Spa_g12442 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15017 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g21545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57153 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010837_P001 LPA66, Zm00001e010837 Pentatricopeptide repeat-containing protein At5g48910... 0.04 OrthoFinder output from all 47 species
Zm00001e011923_P001 Zm00001e011923 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
Zm00001e023333_P001 Zm00001e023333 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e024311_P001 Zm00001e024311 Pentatricopeptide repeat-containing protein At1g09410,... 0.03 OrthoFinder output from all 47 species
Zm00001e030831_P001 Zm00001e030831 Pentatricopeptide repeat-containing protein At3g20730... 0.03 OrthoFinder output from all 47 species
Zm00001e035654_P001 EMB2758, Zm00001e035654 Pentatricopeptide repeat-containing protein At4g33990... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048766 root hair initiation IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 173 219
IPR002885 Pentatricopeptide_repeat 274 320
No external refs found!