AT4G18240 (ATSS4, SS4, SSIV)

Aliases : ATSS4, SS4, SSIV

Description : starch synthase 4

Gene families : OG0000693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000693_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G18240

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00214840	ATSS4, SS4,...	Probable starch synthase 4, chloroplastic/amyloplastic...	0.05	OrthoFinder output from all 47 species
AMTR_s00037p00164200	ATSS3, SS3,...	Carbohydrate metabolism.starch...	0.04	OrthoFinder output from all 47 species
Adi_g058565	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g05532	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g25563	ATSS4, SS4, SSIV	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g13690	ATSS3, SS3	starch synthase *(SS3) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g05131	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g02168	ATSS4, SS4, SSIV	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene02948.t1	ATSS4, SS4,...	starch synthase *(SS5) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene02950.t1	Aspi01Gene02950	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene43820.t1	ATSS4, SS4,...	starch synthase *(SS4) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g26958	ATSS3, SS3	starch synthase *(SS3) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g33306	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.07	OrthoFinder output from all 47 species
Ceric.01G125000.1	ATSS4, SS4,...	starch synthase *(SS4) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.18G020900.1	ATSS3, SS3,...	starch synthase *(SS3) & original description:...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020746.8	ATSS3, SS3	Probable starch synthase 4, chloroplastic/amyloplastic...	0.02	OrthoFinder output from all 47 species
Cre06.g282000	ATSS3, SS3	Carbohydrate metabolism.starch...	0.02	OrthoFinder output from all 47 species
Dac_g10971	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g01991	ATSS4, SS4, SSIV	starch synthase *(SS5) & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g08981	ATSS3, SS3	starch synthase *(SS3) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g43255	ATSS4, SS4, SSIV	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g50824	ATSS3, SS3	starch synthase *(SS3) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os04g53310.1	ATSS3, SS3,...	starch synthase (SSIII)	0.02	OrthoFinder output from all 47 species
Len_g43983	ATSS3, SS3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g49747	ATSS4, SS4, SSIV	starch synthase *(SS5) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g04240	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g08030.1	ATSS4, SS4, SSIV	Probable starch synthase 4, chloroplastic/amyloplastic...	0.04	OrthoFinder output from all 47 species
Msp_g26184	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g07616	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g39876	ATSS4, SS4, SSIV	starch synthase *(SS5) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g43473	ATSS3, SS3	starch synthase *(SS3) & original description: none	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005824	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: CDS=149-3475	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026292	ATSS4, SS4, SSIV	not classified & original description: CDS=1-2052	0.03	OrthoFinder output from all 47 species
Solyc02g071040.3.1	ATSS4, SS4,...	starch synthase (SSIV)	0.07	OrthoFinder output from all 47 species
Solyc02g080570.3.1	ATSS3, SS3,...	starch synthase (SSIII)	0.06	OrthoFinder output from all 47 species
Tin_g26044	ATSS4, SS4, SSIV	starch synthase *(SS4) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
BP	GO:0000272	polysaccharide catabolic process	RCA	Interproscan
BP	GO:0001666	response to hypoxia	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	IMP	Interproscan
BP	GO:0005982	starch metabolic process	RCA	Interproscan
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006643	membrane lipid metabolic process	None	Extended
BP	GO:0006664	glycolipid metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009247	glycolipid biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009664	plant-type cell wall organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	ISS	Interproscan
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
BP	GO:0019374	galactolipid metabolic process	None	Extended
BP	GO:0019375	galactolipid biosynthetic process	RCA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046467	membrane lipid biosynthetic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903509	liposaccharide metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	IEP	HCCA
MF	GO:0004556	alpha-amylase activity	IEP	HCCA
MF	GO:0004614	phosphoglucomutase activity	IEP	HCCA
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	HCCA
BP	GO:0005983	starch catabolic process	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006012	galactose metabolic process	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006655	phosphatidylglycerol biosynthetic process	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006772	thiamine metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006874	cellular calcium ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0007584	response to nutrient	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009228	thiamine biosynthetic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
BP	GO:0009251	glucan catabolic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009581	detection of external stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009590	detection of gravity	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010266	response to vitamin B1	IEP	HCCA
CC	GO:0010319	stromule	IEP	HCCA
BP	GO:0010353	response to trehalose	IEP	HCCA
BP	GO:0016045	detection of bacterium	IEP	HCCA
MF	GO:0016160	amylase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016781	phosphotransferase activity, paired acceptors	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
MF	GO:0019144	ADP-sugar diphosphatase activity	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
BP	GO:0019255	glucose 1-phosphate metabolic process	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019388	galactose catabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0019757	glycosinolate metabolic process	IEP	HCCA
BP	GO:0019760	glucosinolate metabolic process	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033273	response to vitamin	IEP	HCCA
BP	GO:0034308	primary alcohol metabolic process	IEP	HCCA
BP	GO:0034309	primary alcohol biosynthetic process	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
MF	GO:0050521	alpha-glucan, water dikinase activity	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
MF	GO:0051752	phosphoglucan, water dikinase activity	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0080041	ADP-ribose pyrophosphohydrolase activity	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0098543	detection of other organism	IEP	HCCA
BP	GO:0098581	detection of external biotic stimulus	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001296	Glyco_trans_1	839	994
IPR013534	Starch_synth_cat_dom	544	783

External Links

No external refs found!

AT4G18240 (ATSS4, SS4, SSIV)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation