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  5. AT4G19170

AT4G19170 (CCD4, NCED4)


Aliases : CCD4, NCED4

Description : nine-cis-epoxycarotenoid dioxygenase 4


Gene families : OG0000239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G19170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00256590 CCD4, NCED4,... Zeaxanthin 7,8(7,8)-cleavage dioxygenase, chromoplastic... 0.03 OrthoFinder output from all 47 species
Aev_g06068 ATCCD1, CCD1,... EC_1.13 oxidoreductase acting on single donor with... 0.02 OrthoFinder output from all 47 species
Aspi01Gene54184.t1 ATCCD1, CCD1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013327 ATNCED9, NCED9 not classified & original description: CDS=1-1473 0.06 OrthoFinder output from all 47 species
Ceric.01G061900.1 ATCCD1, CCD1,... EC_1.13 oxidoreductase acting on single donor with... 0.04 OrthoFinder output from all 47 species
MA_10434448g0010 NCED3, SIS7,... neoxanthin cleavage protein 0.04 OrthoFinder output from all 47 species
Ore_g10877 NCED3, SIS7,... EC_1.13 oxidoreductase acting on single donor with... 0.02 OrthoFinder output from all 47 species
Smo272067 ATCCD1, CCD1,... Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
Smo80651 NCED3, SIS7,... Secondary metabolism.terpenoids.terpenoid... 0.04 OrthoFinder output from all 47 species
Solyc08g075490.4.1 CCD4, NCED4,... carotenoid cleavage dioxygenase (CCD4) 0.09 OrthoFinder output from all 47 species
Spa_g15685 CCD4, NCED4 EC_1.13 oxidoreductase acting on single donor with... 0.02 OrthoFinder output from all 47 species
Spa_g17929 NCED3, SIS7,... EC_1.13 oxidoreductase acting on single donor with... 0.03 OrthoFinder output from all 47 species
Tin_g08721 ATCCD1, CCD1,... EC_1.13 oxidoreductase acTing on single donor with... 0.02 OrthoFinder output from all 47 species
Zm00001e038960_P002 ATCCD1, CCD1,... carotenoid cleavage dioxygenase (CCD1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009718 anthocyanin-containing compound biosynthetic process RCA Interproscan
CC GO:0010287 plastoglobule IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006636 unsaturated fatty acid biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0007602 phototransduction IEP HCCA
BP GO:0007623 circadian rhythm IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009106 lipoate metabolic process IEP HCCA
BP GO:0009108 obsolete coenzyme biosynthetic process IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009585 red, far-red light phototransduction IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
BP GO:0009683 indoleacetic acid metabolic process IEP HCCA
BP GO:0009684 indoleacetic acid biosynthetic process IEP HCCA
BP GO:0009692 ethylene metabolic process IEP HCCA
BP GO:0009693 ethylene biosynthetic process IEP HCCA
BP GO:0009694 jasmonic acid metabolic process IEP HCCA
BP GO:0009695 jasmonic acid biosynthetic process IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009739 response to gibberellin IEP HCCA
BP GO:0009751 response to salicylic acid IEP HCCA
BP GO:0009850 auxin metabolic process IEP HCCA
BP GO:0009851 auxin biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010023 proanthocyanidin biosynthetic process IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010191 mucilage metabolic process IEP HCCA
BP GO:0010192 mucilage biosynthetic process IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010600 regulation of auxin biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010928 regulation of auxin mediated signaling pathway IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
BP GO:0019758 glycosinolate biosynthetic process IEP HCCA
BP GO:0019761 glucosinolate biosynthetic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0032350 regulation of hormone metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033559 unsaturated fatty acid metabolic process IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
BP GO:0042435 indole-containing compound biosynthetic process IEP HCCA
BP GO:0042446 hormone biosynthetic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043449 cellular alkene metabolic process IEP HCCA
BP GO:0043450 alkene biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046885 regulation of hormone biosynthetic process IEP HCCA
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP HCCA
BP GO:0048359 mucilage metabolic process involved in seed coat development IEP HCCA
BP GO:0048511 rhythmic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071214 cellular response to abiotic stimulus IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
BP GO:0090354 regulation of auxin metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0104004 cellular response to environmental stimulus IEP HCCA
BP GO:0120251 hydrocarbon biosynthetic process IEP HCCA
BP GO:0120252 hydrocarbon metabolic process IEP HCCA
BP GO:0120254 olefinic compound metabolic process IEP HCCA
BP GO:0120255 olefinic compound biosynthetic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1900673 olefin metabolic process IEP HCCA
BP GO:1900674 olefin biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 115 587
No external refs found!