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  5. AT4G21350

AT4G21350 (PUB8, B80)


Aliases : PUB8, B80

Description : plant U-box 8


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G21350

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00171260 PUB14, ATPUB14,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.04 OrthoFinder output from all 47 species
Adi_g023452 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025518 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057744 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080188 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03944 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05890 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06711 PUB18, ATPUB18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07222 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09257 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g05472 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G103500.1 PUB13, ATPUB13,... not classified & original description: pacid=50631830... 0.02 OrthoFinder output from all 47 species
Ceric.08G025000.1 Ceric.08G025000 not classified & original description: pacid=50638405... 0.03 OrthoFinder output from all 47 species
Ceric.13G074400.1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G042900.1 PUB13, ATPUB13,... not classified & original description: pacid=50623547... 0.03 OrthoFinder output from all 47 species
Dac_g09044 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02771 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29208 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01009347001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01020229001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os02g13960.1 ATPUB17, PUB17,... U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
LOC_Os08g04470.1 PUB8, B80, LOC_Os08g04470 U-box domain-containing protein 8 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_84321g0010 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
MA_9917294g0010 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Msp_g37725 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07686 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g33829 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30472 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013821 No alias not classified & original description: CDS=1-987 0.03 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g076040.3.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Spa_g07376 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01104 No alias E3 ubiquiTin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30902 PUB13, ATPUB13 E3 ubiquiTin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g39824 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002954_P001 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0016567 protein ubiquitination NAS Interproscan
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Type GO Term Name Evidence Source
BP GO:0002684 positive regulation of immune system process IEP HCCA
BP GO:0002833 positive regulation of response to biotic stimulus IEP HCCA
MF GO:0003958 NADPH-hemoprotein reductase activity IEP HCCA
MF GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0007623 circadian rhythm IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0010942 positive regulation of cell death IEP HCCA
CC GO:0015030 Cajal body IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031349 positive regulation of defense response IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0032103 positive regulation of response to external stimulus IEP HCCA
BP GO:0032957 inositol trisphosphate metabolic process IEP HCCA
BP GO:0034052 positive regulation of plant-type hypersensitive response IEP HCCA
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP HCCA
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0043068 positive regulation of programmed cell death IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0048511 rhythmic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048571 long-day photoperiodism IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048574 long-day photoperiodism, flowering IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
MF GO:0106019 phosphatidylinositol-4,5-bisphosphate phosphatase activity IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 6 73
No external refs found!