AT4G24960 (HVA22D, ATHVA22D)

Aliases : HVA22D, ATHVA22D

Description : HVA22 homologue D

Gene families : OG0000842 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000842_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G24960

Target	Alias	Description	ECC score	Gene Family Method
Cba_g13953	HVA22F	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.13G028300.1	HVA22F, Ceric.13G028300	not classified & original description: pacid=50636869...	0.03	OrthoFinder output from all 47 species
Dde_g31650	HVA22F	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01000808001	HVA22F	HVA22-like protein f OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01008576001	HVA22E, ATHVA22E	HVA22-like protein e OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01020012001	ATHVA22A, HVA22A	HVA22-like protein a OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_24347	HVA22F	HVA22-like protein f OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Solyc05g007300.3.1	HVA22C,...	HVA22-like protein c OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Spa_g31014	HVA22F	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g25027	HVA22F	not classified & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009269	response to desiccation	RCA	Interproscan
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009409	response to cold	RCA	Interproscan
BP	GO:0009414	response to water deprivation	IEP	Interproscan
BP	GO:0009414	response to water deprivation	RCA	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
BP	GO:0009908	flower development	IMP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010506	regulation of autophagy	None	Extended
BP	GO:0010507	negative regulation of autophagy	IMP	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031330	negative regulation of cellular catabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042538	hyperosmotic salinity response	IEP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0007029	endoplasmic reticulum organization	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0046658	obsolete anchored component of plasma membrane	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
CC	GO:0071458	obsolete integral component of cytoplasmic side of endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0071782	endoplasmic reticulum tubular network	IEP	HCCA
BP	GO:0071786	endoplasmic reticulum tubular network organization	IEP	HCCA
CC	GO:0098827	endoplasmic reticulum subcompartment	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004345	TB2_DP1_HVA22	24	99

External Links

No external refs found!

AT4G24960 (HVA22D, ATHVA22D)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation