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  5. AT4G25410

AT4G25410


Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein


Gene families : OG0002401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G25410
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00269160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AMTR_s00002p00041060 evm_27.TU.AmTr_v1... Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.02 OrthoFinder output from all 47 species
AMTR_s00032p00045230 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AMTR_s00063p00154030 ORG2, BHLH038,... Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.03 OrthoFinder output from all 47 species
AT1G10585 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G12540 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.08 OrthoFinder output from all 47 species
AT1G71200 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G25400 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G51780 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
Aev_g38252 BHLH100 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30730 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01018460001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
GSVIVT01020561001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
Gb_26737 No alias transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
MA_141559g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_14352g0010 No alias transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
MA_14544g0010 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_290659g0010 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
MA_321195g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_331265g0010 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_938775g0010 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Pir_g45090 ORG3, BHLH039 bHLH-Ib-class transcriptional regulator of copper/iron... 0.04 OrthoFinder output from all 47 species
Pir_g47256 No alias bHLH-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g50631 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc02g078130.3.1 Solyc02g078130 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc03g114230.2.1 Solyc03g114230 Transcription factor bHLH162 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Solyc03g114237.1.1 Solyc03g114237 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc06g035490.3.1 Solyc06g035490 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Solyc09g074805.1.1 Solyc09g074805 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc10g079650.2.1 BHLH100, Solyc10g079650 transcription factor (bHLH). iron/copper homeostasis... 0.06 OrthoFinder output from all 47 species
Solyc10g079660.3.1 ORG2, BHLH038,... transcription factor (bHLH). iron/copper homeostasis... 0.05 OrthoFinder output from all 47 species
Solyc10g079680.3.1 ORG2, BHLH038,... transcription factor (bHLH). iron/copper homeostasis... 0.02 OrthoFinder output from all 47 species
Solyc12g010585.1.1 Solyc12g010585 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e017129_P001 Zm00001e017129 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription TAS Interproscan
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Type GO Term Name Evidence Source
CC GO:0005768 endosome IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
BP GO:0006857 oligopeptide transport IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009627 systemic acquired resistance IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009804 coumarin metabolic process IEP HCCA
BP GO:0009805 coumarin biosynthetic process IEP HCCA
BP GO:0009962 regulation of flavonoid biosynthetic process IEP HCCA
BP GO:0009963 positive regulation of flavonoid biosynthetic process IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
BP GO:0015833 peptide transport IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0042886 amide transport IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 44 93
No external refs found!