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  5. AT4G30700

AT4G30700


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G30700

Target Alias Description ECC score Gene Family Method Actions
AT3G25970 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G08210 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G18520 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G59200 OTP80 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g001705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g068892 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g069256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111309 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26540 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g30166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52586.t1 Aspi01Gene52586 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57285.t1 Aspi01Gene57285 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72347.t1 Aspi01Gene72347 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06983 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G069300.1 OTP86, Ceric.09G069300 not classified & original description: pacid=50588354... 0.03 OrthoFinder output from all 47 species
Dac_g40922 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38525 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01025574001 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.04 OrthoFinder output from all 47 species
Len_g01393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17343 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20192 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo115590 REME1 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species
Smo82024 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Smo98551 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species
Spa_g23985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24048 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05462 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000963 mitochondrial RNA processing IMP Interproscan
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0016554 cytidine to uridine editing IMP Interproscan
BP GO:0080156 mitochondrial mRNA modification IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 659 782
IPR002885 Pentatricopeptide_repeat 288 316
IPR002885 Pentatricopeptide_repeat 187 215
IPR002885 Pentatricopeptide_repeat 160 183
IPR002885 Pentatricopeptide_repeat 387 431
IPR002885 Pentatricopeptide_repeat 484 531
No external refs found!