AT4G30980 (LRL2)

Aliases : LRL2

Description : LJRHL1-like 2

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G30980

Target	Alias	Description	ECC score	Gene Family Method
Als_g45376	RSL2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g50098	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g32490	RSL2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene12792.t1	HEC2, Aspi01Gene12792	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g19851	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g55636	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.04G097400.1	HEC1, Ceric.04G097400	bHLH-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g33129	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12150	UNE10	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008093001	No alias	External stimuli response.light.UV-A/blue...	0.04	OrthoFinder output from all 47 species
GSVIVT01020121001	No alias	External stimuli response.light.UV-A/blue...	0.04	OrthoFinder output from all 47 species
GSVIVT01022111001	SPT	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
LOC_Os05g04740.2	PIF3, POC1,...	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
LOC_Os06g41060.1	LOC_Os06g41060	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os12g40590.1	SPT, LOC_Os12g40590	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Lfl_g21331	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ppi_g13554	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Smo418491	RSL2	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
Solyc12g010170.2.1	LRL1, Solyc12g010170	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080147	root hair cell development	IMP	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006541	glutamine metabolic process	IEP	HCCA
BP	GO:0006542	glutamine biosynthetic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010054	trichoblast differentiation	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016211	ammonia ligase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0042126	nitrate metabolic process	IEP	HCCA
BP	GO:0042128	nitrate assimilation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0071941	nitrogen cycle metabolic process	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	141	186

External Links

No external refs found!

AT4G30980 (LRL2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation