AT4G31580 (RSZ22, At-RSZ22,...)

Aliases : RSZ22, At-RSZ22, RSZP22, SRZ-22, SRZ22

Description : serine/arginine-rich 22

Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G31580

Target	Alias	Description	ECC score	Gene Family Method
Ceric.37G052000.1	At-RSZ22a,...	RNA splicing factor *(RSZ21/22) & original description:...	0.05	OrthoFinder output from all 47 species
Cre09.g408200	At-RSZ22a, RSZ22a	RNA processing.RNA splicing.spliceosome-associated...	0.11	OrthoFinder output from all 47 species
Dcu_g00843	At-RSZ22a, RSZ22a	RNA splicing factor *(RSZ21/22) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g41811	At-RSZ22a, RSZ22a	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01020220001	At-RSZ22a, RSZ22a	RNA processing.RNA splicing.spliceosome-associated...	0.04	OrthoFinder output from all 47 species
GSVIVT01033172001	At-RSZ22a, RSZ22a	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Len_g19035	At-RSZ22a, RSZ22a	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10435943g0010	At-RSZ22a, RSZ22a	RSZ21/22 RNA splicing factor	0.04	OrthoFinder output from all 47 species
Pir_g18145	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g66414	At-RSZ22a, RSZ22a	RNA splicing factor *(RSZ21/22) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g01672	At-RSZ22a, RSZ22a	RNA splicing factor *(RSZ21/22) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015077_P001	At-RSZ22a,...	RSZ21/22 RNA splicing factor	0.04	OrthoFinder output from all 47 species
Zm00001e016090_P001	At-RSZ22a,...	RSZ21/22 RNA splicing factor	0.06	OrthoFinder output from all 47 species
Zm00001e023726_P001	At-RSZ22a,...	RSZ21/22 RNA splicing factor	0.03	OrthoFinder output from all 47 species
Zm00001e036288_P001	At-RSZ22a,...	RSZ21/22 RNA splicing factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
BP	GO:0000398	mRNA splicing, via spliceosome	TAS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IDA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0009269	response to desiccation	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
CC	GO:0015030	Cajal body	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
BP	GO:0043457	regulation of cellular respiration	IEP	HCCA
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0048316	seed development	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	100	115
IPR000504	RRM_dom	4	61

External Links

No external refs found!

AT4G31580 (RSZ22, At-RSZ22,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation