AT4G32720 (AtLa1, La1)

Aliases : AtLa1, La1

Description : La protein 1

Gene families : OG0003172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003172_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G32720

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00056900	AtLa1, La1,...	La protein 1 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Adi_g012248	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g11405	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g11426	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.26G010200.1	AtLa1, La1,...	nascent RNA chaperone *(LA) & original description:...	0.06	OrthoFinder output from all 47 species
Dac_g09267	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.08	OrthoFinder output from all 47 species
Ehy_g11687	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01035666001	AtLa1, La1	La protein 1 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_04532	AtLa1, La1	RNA chaperone (LA). rRNA chaperone (IRP2)	0.08	OrthoFinder output from all 47 species
Lfl_g25839	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.04	OrthoFinder output from all 47 species
MA_78251g0010	AtLa1, La1	La protein 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Mp1g04820.1	AtLa1, La1	RNA chaperone (LA). rRNA chaperone (IRP2)	0.11	OrthoFinder output from all 47 species
Ore_g43153	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c21_14880V3.1	AtLa1, La1, Pp3c21_14880	La protein 1	0.01	OrthoFinder output from all 47 species
Sam_g10339	No alias	nascent RNA chaperone *(LA) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g10340	No alias	nascent RNA chaperone *(LA) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc08g068310.3.1	AtLa1, La1,...	RNA chaperone (LA). rRNA chaperone (IRP2)	0.15	OrthoFinder output from all 47 species
Spa_g09674	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.07	OrthoFinder output from all 47 species
Tin_g31164	AtLa1, La1	nascent RNA chaperone *(LA) & original description: none	0.09	OrthoFinder output from all 47 species
Zm00001e015074_P001	AtLa1, La1,...	RNA chaperone (LA). rRNA chaperone (IRP2)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000469	cleavage involved in rRNA processing	None	Extended
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IDA	Interproscan
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005654	nucleoplasm	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	RCA	Interproscan
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009561	megagametogenesis	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	RCA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	IMP	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048366	leaf development	None	Extended
BP	GO:0048825	cotyledon development	RCA	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051301	cell division	RCA	Interproscan
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:0090501	RNA phosphodiester bond hydrolysis	None	Extended
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000741	karyogamy	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007000	nucleolus organization	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0017126	nucleologenesis	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:0046658	obsolete anchored component of plasma membrane	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090069	regulation of ribosome biogenesis	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2000232	regulation of rRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006630	La_HTH	14	83
IPR000504	RRM_dom	123	185
IPR014886	La_xRRM	310	404

External Links

No external refs found!

AT4G32720 (AtLa1, La1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation