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AT4G37380


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G37380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.01 OrthoFinder output from all 47 species
Adi_g006574 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g016095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g017865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g23962 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene34780.t1 Aspi01Gene34780 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54730.t1 Aspi01Gene54730 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012382 OTP84 not classified & original description: CDS=1-2100 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013783 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1998 0.02 OrthoFinder output from all 47 species
Azfi_s0033.g025102 No alias not classified & original description: CDS=1-3510 0.02 OrthoFinder output from all 47 species
Azfi_s0045.g029802 No alias not classified & original description: CDS=1-2208 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033567 EMB2758 not classified & original description: CDS=1-2352 0.03 OrthoFinder output from all 47 species
Azfi_s0058.g034473 No alias not classified & original description: CDS=1-2799 0.09 OrthoFinder output from all 47 species
Azfi_s0068.g036422 No alias not classified & original description: CDS=1-2670 0.06 OrthoFinder output from all 47 species
Azfi_s0326.g065222 No alias not classified & original description: CDS=1-2895 0.03 OrthoFinder output from all 47 species
Azfi_s0373.g067166 No alias not classified & original description: CDS=1-2166 0.02 OrthoFinder output from all 47 species
Azfi_s0471.g072918 No alias not classified & original description: CDS=1-3447 0.02 OrthoFinder output from all 47 species
Ceric.05G080500.1 Ceric.05G080500 not classified & original description: pacid=50577586... 0.04 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.01 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.02 OrthoFinder output from all 47 species
LOC_Os10g40920.1 LOC_Os10g40920 RNA editing factor (MEF13) 0.03 OrthoFinder output from all 47 species
Len_g16195 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23561 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g21699 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g36011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007959 No alias not classified & original description: CDS=1692-4925 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012043 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1878 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0009062 fatty acid catabolic process RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 466 494
IPR002885 Pentatricopeptide_repeat 165 190
IPR002885 Pentatricopeptide_repeat 193 223
IPR002885 Pentatricopeptide_repeat 297 322
IPR002885 Pentatricopeptide_repeat 224 253
IPR002885 Pentatricopeptide_repeat 323 372
IPR032867 DYW_dom 498 621
No external refs found!