AT4G38680 (ATCSP2, GRP2, CSDP2, CSP2)

Aliases : ATCSP2, GRP2, CSDP2, CSP2

Description : glycine rich protein 2

Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G38680

Target	Alias	Description	ECC score	Gene Family Method
Adi_g007943	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species
Adi_g107191	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0267.g061051	ATCSP3, CSP3	cold-responsive mRNA chaperone *(CSD) & original...	0.05	OrthoFinder output from all 47 species
Cba_g69745	No alias	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000169.17	No alias	External stimuli response.temperature.Csd...	0.01	OrthoFinder output from all 47 species
GSVIVT01024055001	ATCSP2, GRP2, CSDP2, CSP2	External stimuli response.temperature.Csd...	0.06	OrthoFinder output from all 47 species
LOC_Os08g03520.1	GRP2B, ATGRP2B,...	RNA chaperone (CSP). mRNA chaperone (CSD)	0.03	OrthoFinder output from all 47 species
Lfl_g23689	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.02	OrthoFinder output from all 47 species
Pir_g44326	No alias	cold-responsive mRNA chaperone *(CSD) & original...	0.04	OrthoFinder output from all 47 species
Pp3c5_7920V3.1	GRP2B, ATGRP2B,...	cold shock domain protein 1	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003991	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010185	ATCSP2, GRP2, CSDP2, CSP2	cold-responsive mRNA chaperone *(CSD) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019874	GRP2B, ATGRP2B, ATCSP4	cold-responsive mRNA chaperone *(CSD) & original...	0.02	OrthoFinder output from all 47 species
Sam_g23946	No alias	cold-responsive mRNA chaperone *(CSD) & original...	0.03	OrthoFinder output from all 47 species
Solyc01g111300.4.1	GRP2B, ATGRP2B,...	RNA chaperone (CSP). mRNA chaperone (CSD)	0.07	OrthoFinder output from all 47 species
Solyc02g083800.4.1	ATCSP3, CSP3,...	RNA chaperone (CSP). mRNA chaperone (CSD)	0.04	OrthoFinder output from all 47 species
Solyc03g033500.4.1	ATCSP3, CSP3,...	RNA chaperone (CSP). mRNA chaperone (CSD)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IDA	Interproscan
MF	GO:0003697	single-stranded DNA binding	IDA	Interproscan
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009269	response to desiccation	IEP	Interproscan
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009414	response to water deprivation	IEP	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009631	cold acclimation	IGI	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IMP	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032392	DNA geometric change	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032508	DNA duplex unwinding	IDA	Interproscan
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043457	regulation of cellular respiration	IMP	Interproscan
BP	GO:0043467	regulation of generation of precursor metabolites and energy	None	Extended
BP	GO:0048316	seed development	IMP	Interproscan
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048443	stamen development	IMP	Interproscan
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0015030	Cajal body	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	184	200
IPR001878	Znf_CCHC	131	145
IPR002059	CSP_DNA-bd	12	76

External Links

No external refs found!

AT4G38680 (ATCSP2, GRP2, CSDP2, CSP2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation