AT5G01200

Description : Duplicated homeodomain-like superfamily protein

Gene families : OG0000160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000160_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G01200

Target	Alias	Description	ECC score	Gene Family Method
AT1G74840	No alias	Homeodomain-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G58900	No alias	Homeodomain-like transcriptional regulator	0.03	OrthoFinder output from all 47 species
Adi_g056824	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.04	OrthoFinder output from all 47 species
Adi_g106458	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Aev_g12183	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Als_g48089	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Als_g49186	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Als_g57625	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Aob_g16613	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene17159.t1	Aspi01Gene17159	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Ceric.14G074800.1	Ceric.14G074800	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.06	OrthoFinder output from all 47 species
Ceric.22G032800.1	Ceric.22G032800	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Dac_g00698	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Dac_g03644	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g03859	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g07543	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g39065	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Dde_g05736	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Dde_g25023	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g27445	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01013871001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
GSVIVT01015223001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	OrthoFinder output from all 47 species
GSVIVT01016996001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.05	OrthoFinder output from all 47 species
GSVIVT01024794001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.09	OrthoFinder output from all 47 species
Gb_28483	No alias	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
LOC_Os01g09280.1	LOC_Os01g09280	transcription factor (MYB-related)	0.04	OrthoFinder output from all 47 species
LOC_Os05g37730.1	LOC_Os05g37730	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Len_g12267	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Len_g15601	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Len_g41469	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Lfl_g03042	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Lfl_g06129	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
MA_41803g0010	No alias	transcription factor (MYB-related)	0.02	OrthoFinder output from all 47 species
MA_925123g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Msp_g35415	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g13154	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Ore_g05056	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.05	OrthoFinder output from all 47 species
Pir_g10678	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g12245	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.02	OrthoFinder output from all 47 species
Solyc03g096350.3.1	Solyc03g096350	transcription factor (MYB-related)	0.04	OrthoFinder output from all 47 species
Solyc03g113620.3.1	Solyc03g113620	transcription factor (MYB-related)	0.06	OrthoFinder output from all 47 species
Solyc03g119740.3.1	Solyc03g119740	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Solyc05g013420.1.1	Solyc05g013420	transcription factor (MYB-related)	0.02	OrthoFinder output from all 47 species
Solyc06g034030.3.1	Solyc06g034030	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Solyc09g014250.3.1	Solyc09g014250	transcription factor (MYB-related)	0.05	OrthoFinder output from all 47 species
Spa_g15891	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.04	OrthoFinder output from all 47 species
Spa_g26734	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Spa_g57220	No alias	MYB-RELATED transcription factor *(MYB-R-R) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e019190_P001	Zm00001e019190	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Zm00001e019254_P001	Zm00001e019254	transcription factor (MYB-related)	0.04	OrthoFinder output from all 47 species
Zm00001e025783_P002	Zm00001e025783	transcription factor (MYB-related)	0.04	OrthoFinder output from all 47 species
Zm00001e028729_P001	Zm00001e028729	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
Zm00001e031755_P001	Zm00001e031755	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	29	75
IPR001005	SANT/Myb	147	191

External Links

No external refs found!

AT5G01200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation